Locus 6982

Sequence ID 3R_DroMel_CAF1
Location 18,418,429 – 18,418,525
Length 96
Max. P 0.892951
window11321

overview

Window 1

Location 18,418,429 – 18,418,525
Length 96
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 70.33
Mean single sequence MFE -20.94
Consensus MFE -13.56
Energy contribution -13.64
Covariance contribution 0.08
Combinations/Pair 1.15
Mean z-score -1.55
Structure conservation index 0.65
SVM decision value 0.97
SVM RNA-class probability 0.892951
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18418429 96 - 27905053
AAAU------AUAUGCACAAAUAGGGCCAAGCUCGUAGUUAGGCUACGUGGAUGCCCUGUAGAGUAUUAUGUGCAUCCACACUUAUUUUCUG---------AUUAUUAAUA
.(((------(....((.((((((((((.(((.....))).)))...(((((((((.((........)).).)))))))).)))))))..))---------..)))).... ( -24.20)
>DroSec_CAF1 4171 105 - 1
AAAU------AUAUGCACAAAUAGGGCCAAACUCGUAGUUAGGCUAUGUGGAUGCCCUGUAGAUUAUUAUUUGUAUCUGCAUUUAUUUUCUGAAUAUUCUGACUAUUAAUA
((((------(.((((....(((((((....(.(((((.....))))).)...)))))))((((..........)))))))).)))))....................... ( -22.80)
>DroSim_CAF1 4609 96 - 1
AAAU------AUAUGCACAAAUAGGGCCAAACUCGUAGUUAGGCUAUGUGGAUGCCCUGUAGAUUAUUAUUUGUAUCUGCAUAUAUUUUCUG---------AUUACUAAUA
((((------((((((....(((((((....(.(((((.....))))).)...)))))))((((..........))))))))))))))....---------.......... ( -26.70)
>DroEre_CAF1 4549 74 - 1
-----------UGUGCAUAAAUAAGGCCAAGCUCGUAGAUAAGCUAUGCGGAUGCCCUGUC--A---------------UAUGUGUUUAUAC---------GUAGUCAAUA
-----------.(..((((....(((.((..(.(((((.....))))).)..)).)))...--.---------------))))..)......---------.......... ( -12.40)
>DroYak_CAF1 4549 100 - 1
AAAUACUCGUAUAUGCAUAAAUAGGGCCAAGCUCGUAGAUAAGCUGUUUGAAUGCCCUGUA--UUAUUAAGUGUAUUUAUAUUUAUUUUCAC---------AUUAUCAAUA
(((((...((((((..((((((((((((((((..((......)).)))))...))))))).--))))...))))))...)))))........---------.......... ( -18.60)
>consensus
AAAU______AUAUGCACAAAUAGGGCCAAGCUCGUAGUUAGGCUAUGUGGAUGCCCUGUAGAUUAUUAUGUGUAUCUACAUUUAUUUUCUG_________AUUAUUAAUA
....................(((((((....(.(((((.....))))).)...)))))))................................................... (-13.56 = -13.64 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:46 2006