Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,490,282 – 2,490,379 |
Length | 97 |
Max. P | 0.953969 |
Location | 2,490,282 – 2,490,379 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 76.65 |
Mean single sequence MFE | -18.70 |
Consensus MFE | -16.32 |
Energy contribution | -16.20 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.49 |
Structure conservation index | 0.87 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.953969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2490282 97 + 27905053 ---------ACAGUCACAGUCACAAUCAUAAUCACCAUCCACAUUCACAUUCACAUUCGCAUUCAC-AUCACGGUAGCAGUAAC------AGCAGCACAGACUGUGACAG-----UUG ---------...(((((((((............(((..............................-.....))).((.((...------.)).))...)))))))))..-----... ( -18.15) >DroSec_CAF1 17737 85 + 1 ---------ACAGUCACAGUCGCAUUCAUAAUCACCAUCCACAUUCACAUU------------CAC-AUCACGGUAGCAGUAAC------AGCAGCACAGACUGUGACAG-----UUG ---------...(((((((((............(((...............------------...-.....))).((.((...------.)).))...)))))))))..-----... ( -18.60) >DroSim_CAF1 17826 85 + 1 ---------ACAGUCACAGUCGCAAUCAUAAUCACCAUCCACAUUCACAUU------------CAC-AUCACGGUAGCAGUAAC------AGCAGCACAGACUGUGACAG-----UUG ---------...(((((((((............(((...............------------...-.....))).((.((...------.)).))...)))))))))..-----... ( -18.60) >DroEre_CAF1 19132 94 + 1 ACUGCAGUCACAGUCACAGUCACAAUCGUAAUCGCC-UCCACGUUCA------CAUU------CCCUCUCACGGUAGCAGCAAC------AGCAGCACAGACUGCGACAG-----UUG ............(((.(((((............((.-.((.......------....------.........))..)).((...------.))......))))).)))..-----... ( -17.35) >DroYak_CAF1 18804 108 + 1 --UGCACU-GCAGUCACAGUCACAAUCAUAAUCACC-UUCACGUUCACAUCCACAUU------CCCUCUCACGGUAGCAGUAAUACUCGUAGCAGCACAGACUGUGACAGUUCAGUUG --...(((-(..(((((((((...............-.....((........))...------..((((.((((((.......))).))))).))....)))))))))....)))).. ( -20.80) >consensus _________ACAGUCACAGUCACAAUCAUAAUCACCAUCCACAUUCACAUU__CAUU______CAC_AUCACGGUAGCAGUAAC______AGCAGCACAGACUGUGACAG_____UUG ............(((((((((............(((....................................))).((.((..........)).))...))))))))).......... (-16.32 = -16.20 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:43 2006