| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,409,577 – 18,409,681 |
| Length | 104 |
| Max. P | 0.902901 |
| Location | 18,409,577 – 18,409,681 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 79.56 |
| Mean single sequence MFE | -31.05 |
| Consensus MFE | -22.10 |
| Energy contribution | -21.77 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.902901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18409577 104 - 27905053 A-CUUUAAAAU----CUAAACCCAUAUAUAU---GCAGGCUCUCAAGGCUUUUGAAAUGGCCAAAACGGUCAACUGGCGCCAGUUGGCAAACAGUGGACGCCAGGCAGAUUU .-.........----...............(---((.((((.....((((........)))).....))))..(((((((((.(((.....)))))).)))))))))..... ( -29.20) >DroSec_CAF1 2952 104 - 1 A-CUUUAAACU----GUAUUCCCAUUUAUCU---GUAGGCCCUCAAGGCUUUCAAAAUGGCCAAAACGGUCAACUGGCGCCAGUUGGCAGACAGUGGACGCCAGGCAGAUUU .-.........----............((((---((.((((.....((((........)))).....))))..(((((((((.(((.....)))))).)))))))))))).. ( -33.90) >DroSim_CAF1 2948 104 - 1 A-CUUUAAACU----GUAUUCCCAUUUAUCU---GCAGGCCCUCAAGGCUUUCAAAAUGGCCAAAACGGUCAACUGGCGCCAGUUGGCAGACAGUGGACGCCAGGCAGAUUU .-.........----............((((---((.((((.....((((........)))).....))))..(((((((((.(((.....)))))).)))))))))))).. ( -35.90) >DroEre_CAF1 2920 96 - 1 A-UUCUAAG------------CCAUUUAUUU---GCAGGCUCUUAAGGCUUUUGAAAUGGCCAAAACGGUCAACUGGCAGCAGUUGGCACACAGUGGACGCCAAGCAGACAU .-.......------------.......(((---((.((((((...((((........))))......((((((((....)))))))).......))).)))..)))))... ( -26.80) >DroYak_CAF1 2889 104 - 1 A-UUCUGAACU----AUAUUCCCAUUUAUUU---GCAGGCCCACAAGGCUUUCGAAAUGGUCAAAAUGGUCAACUGGCAGCAGUUGGCAGACAGUGGACGCCAAGCAGACAU .-.........----.............(((---((.(((((((..((((........))))......((((((((....)))))))).....))))..)))..)))))... ( -28.20) >DroAna_CAF1 3102 112 - 1 AGUUUUGAUAUAAAGAUUUCACCCUUUGUCUUUAACAGGCCCGAAAGGCUUUCGAAAUGGCCAAGACAGUCAACUGGCAACAGUUAGCAGAGAGUGGCCGUCACGCGGAUAU .(((((((..(((((((..........)))))))..((((.(....))))))))))))(((((.....(..(((((....)))))..)......)))))(((.....))).. ( -32.30) >consensus A_CUUUAAACU____AUAUUCCCAUUUAUCU___GCAGGCCCUCAAGGCUUUCGAAAUGGCCAAAACGGUCAACUGGCACCAGUUGGCAGACAGUGGACGCCAGGCAGAUAU .....................................(((((....((((........))))......((((((((....)))))))).......))..))).......... (-22.10 = -21.77 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:41 2006