Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,403,797 – 18,403,946 |
Length | 149 |
Max. P | 0.786562 |
Location | 18,403,797 – 18,403,913 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 88.76 |
Mean single sequence MFE | -27.94 |
Consensus MFE | -19.24 |
Energy contribution | -19.12 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -2.20 |
Structure conservation index | 0.69 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.659970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18403797 116 + 27905053 AGACGUG-UAAAACAAUUUAUAAUUCUCCAGAAGCAGCUCACACUCAAUAAGAGCGACUAUUAUGAGGAAGCUGGCCAUUCGACCUGCCGGACUUCCCAUAAAACCCAG-CAUAGAUA (((..((-((((....))))))..)))......((.((((...........)))).....(((((.((((((((((..........))))).))))))))))......)-)....... ( -27.70) >DroSec_CAF1 23297 115 + 1 AGACAUU-UAAAACCAUUU-CAAUUCUCCAGAAGCAGUUUACACUCAAUAAUAGCGACUUUUAUGAGGAAGCUGGCCAUUCGACCUGCCGGACUUCCCAUAAAACCCAG-CAUACAUA .......-..((((..(((-(.........))))..)))).............((...(((((((.((((((((((..........))))).))))))))))))....)-)....... ( -24.30) >DroSim_CAF1 25390 115 + 1 AGACGUU-UAAAACAAUUU-CAAUUCUCCAGAAGCAGUUUACACUCAAUAAUAGCGACUUUUAUGAGGAAGCUGGCCAUUCGACCUGCCGGACUUCCCAUAAAACCCAG-CAUAGAUA ....(((-((((((..(((-(.........))))..)))).............((...(((((((.((((((((((..........))))).))))))))))))....)-).))))). ( -25.30) >DroEre_CAF1 26475 116 + 1 AAACGUUUUAAAACAGUUU-CGAUUCUACAGAAGCAGUUUACCCUCAAUAAUAGCGACUUUUAUGAGGAAGCUGGCCAUUGGACCUGCCGGACUUCCCAUAAAACCCAA-CGUUGCUA ..........((((.((((-(.........))))).))))...........((((((((((((((.((((((((((..........))))).)))))))))))).....-.))))))) ( -31.70) >DroYak_CAF1 24572 117 + 1 AAACGUUUUUAAACAGUUU-CGAUUCCACAGAAGCAGUUUGCACUCGAUAAUGGCGACUUUUAUGAGGAAGCUGGCCAUUGGACCUGCCGGACUUCCCAUAAAACCAACCCAUAGAUG ...((....(((((.((((-(.........))))).)))))....))...((((....(((((((.((((((((((..........))))).)))))))))))).....))))..... ( -30.70) >consensus AGACGUU_UAAAACAAUUU_CAAUUCUCCAGAAGCAGUUUACACUCAAUAAUAGCGACUUUUAUGAGGAAGCUGGCCAUUCGACCUGCCGGACUUCCCAUAAAACCCAG_CAUAGAUA ..............................((((..(((.............)))..))))((((.((((((((((..........))))).)))))))))................. (-19.24 = -19.12 + -0.12)
Location | 18,403,836 – 18,403,946 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 91.79 |
Mean single sequence MFE | -26.87 |
Consensus MFE | -19.20 |
Energy contribution | -19.60 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.63 |
Structure conservation index | 0.71 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18403836 110 + 27905053 ACACUCAAUAAGAGCGACUAUUAUGAGGAAGCUGGCCAUUCGACCUGCCGGACUUCCCAUAAAACCCAG-CAUAGAUAUUGCCCCACUUCCAUCCAUCAAUU-UGAGGCCCA ...(((((...((..((...(((((.((((((((((..........))))).))))))))))......(-((.......)))..........))..))...)-))))..... ( -25.80) >DroSec_CAF1 23335 110 + 1 ACACUCAAUAAUAGCGACUUUUAUGAGGAAGCUGGCCAUUCGACCUGCCGGACUUCCCAUAAAACCCAG-CAUACAUAUUGCCCCACUUCCAUCCAUCAAUU-UGAAGCCCA .............(((..(((((((.((((((((((..........))))).))))))))))))..).(-((.......)))....................-....))... ( -23.40) >DroSim_CAF1 25428 110 + 1 ACACUCAAUAAUAGCGACUUUUAUGAGGAAGCUGGCCAUUCGACCUGCCGGACUUCCCAUAAAACCCAG-CAUAGAUAUUGCCCCACUUCCAUCCAUCAAUU-UGAAGCCCA .....(((((.((((...(((((((.((((((((((..........))))).))))))))))))....)-).))..))))).....((((............-.)))).... ( -23.92) >DroEre_CAF1 26514 110 + 1 ACCCUCAAUAAUAGCGACUUUUAUGAGGAAGCUGGCCAUUGGACCUGCCGGACUUCCCAUAAAACCCAA-CGUUGCUAUUGCCCCACUUCCAUCAAUCAUUU-UGAGGCCCA ..(((((((((((((((((((((((.((((((((((..........))))).)))))))))))).....-.))))))))))....................)-))))).... ( -34.15) >DroYak_CAF1 24611 112 + 1 GCACUCGAUAAUGGCGACUUUUAUGAGGAAGCUGGCCAUUGGACCUGCCGGACUUCCCAUAAAACCAACCCAUAGAUGUUGCCCCACUUCCAUCAAUCAUUUUUUAGGCCCA ((.((.((.(((((....(((((((.((((((((((..........))))).))))))))))))..........((((..(......)..))))..))))).)).))))... ( -27.10) >consensus ACACUCAAUAAUAGCGACUUUUAUGAGGAAGCUGGCCAUUCGACCUGCCGGACUUCCCAUAAAACCCAG_CAUAGAUAUUGCCCCACUUCCAUCCAUCAAUU_UGAGGCCCA .............((...(((((((.((((((((((..........))))).))))))))))))................................(((....))).))... (-19.20 = -19.60 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:38 2006