Locus 6976

Sequence ID 3R_DroMel_CAF1
Location 18,403,611 – 18,403,725
Length 114
Max. P 0.582942
window11311

overview

Window 1

Location 18,403,611 – 18,403,725
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 80.20
Mean single sequence MFE -16.00
Consensus MFE -9.60
Energy contribution -10.70
Covariance contribution 1.10
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.60
SVM decision value 0.10
SVM RNA-class probability 0.582942
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18403611 114 + 27905053
AAUCAGAACUUUCAAAAUCUAUGUACUUAGAUUGAUCAAACAAAAUCCGGCACGAACCAAAAAAACAAAACACGAGGUCAAAACUCUUGAAAAACGUGCAAAAAUAACUUAGCA
...............((((((......))))))................(((((...................(((.......)))((....)))))))............... ( -13.60)
>DroSec_CAF1 23115 101 + 1
CCUGAGAAUUUUCA-A------------AGAUUGAUCAAAGAAAAUCCGGCACGAACCAAAAACGCCAAACACGAGGUCAAACCUCUUGAAAAACGUGCAAAAAUAACUUAGCA
.(((((.((((((.-.------------.((....))...))))))...(((((...................((((.....))))((....)))))))........))))).. ( -18.10)
>DroSim_CAF1 25207 102 + 1
CCUGAGAAUUUUAAAA------------AGAUUGAUCAAAGAAAAUCCGGCACGAACCAAAAACACCAAACACGAGGUCAAACCUCUUAAAAAACGUGCAAAAAUAACUUAGCA
.(((((..........------------.((((..........))))..(((((...................((((.....))))((....)))))))........))))).. ( -14.80)
>DroEre_CAF1 26289 108 + 1
--UUAGAACUUCUUAAAUACAUGCACUUAGAUUAAUCAAAGAAAAUCCGGCACGAACCGCAAACACAACCCACGAGGUCAAACCUCUUCAAAAACGUGCAAAAA----UUAGCA
--...................(((.(((.((....)).)))........(((((....(......).......((((.....))))........))))).....----...))) ( -15.30)
>DroYak_CAF1 24390 112 + 1
--UUAGAACUUCUUAGAUCUAUGCACUUAGAUUAAUAAAAGCAAAUCCGGCACGAACCACAAACACAACACACGAGGUCAAGCCUCUUGGAAAACGUGCAAAAAUAACUUAGCA
--.((((.((....)).))))((((((((......))).......(((((......))...............((((.....))))..)))....))))).............. ( -18.20)
>consensus
__UGAGAACUUUCAAAAU__AUG_ACUUAGAUUGAUCAAAGAAAAUCCGGCACGAACCAAAAACACAAAACACGAGGUCAAACCUCUUGAAAAACGUGCAAAAAUAACUUAGCA
.................................................(((((...................((((.....))))((....)))))))............... ( -9.60 = -10.70 +   1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:37 2006