| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,400,465 – 18,400,562 |
| Length | 97 |
| Max. P | 0.544079 |
| Location | 18,400,465 – 18,400,562 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 78.90 |
| Mean single sequence MFE | -21.42 |
| Consensus MFE | -16.73 |
| Energy contribution | -16.82 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544079 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18400465 97 + 27905053 U-UCCAAUCUCAUG--------UUACAGGUGGAAACGCCACGUUCCCGAAUCUGCUGAACAACUUUGUGCACGUUUGCAUGUACUUCUACUACAUGAUGGCCGCCA .-.(((...(((((--------(....((((....))))((((...(((((.(((...(((....)))))).))))).)))).........)))))))))...... ( -21.90) >DroVir_CAF1 30145 99 + 1 GUUUCAAUUUGAUUUACA-------UAGGCGGCAAUGCGACAUUCCCCAAUCUGCUGAACAACUUUGUGCAUGUGUGCAUGUACUUCUACUACAUGAUGUCCGCCA ..................-------..((((((...))((((((......((....))........(((((((....)))))))...........)))))))))). ( -21.00) >DroGri_CAF1 22116 106 + 1 UUUUCAUGUUGAUUUUUGUAAUUUUCAGGCGGCAACGCGACAUUCCCCAAUCUGUUGAACAACUUUGUGCAUGUGUGCAUGUACUUCUACUACAUGAUGUCCGCCA ......((..((((.....))))..))(((((((.(((((((..........))))).........(((((((....)))))))..........)).)).))))). ( -23.80) >DroMoj_CAF1 26856 95 + 1 CUCCUAACUAAC-U---A-------AAGGCGGCAAUGCGACAUUCCCCAAUCUGUUGAACAACUUUGUGCAUGUGUGCAUGUACUUCUACUACAUGAUGUCCGCCA ............-.---.-------..(((((((...(((((..........))))).........(((((((....))))))).............)).))))). ( -22.90) >DroAna_CAF1 22017 93 + 1 ----UACUCUCCC---------CUCCAGGUGGAAAUGCCACAUUCCCCAAUCUGCUGAACAACUUCGUGCACGUGUGCAUGUACUUCUACUACAUGAUGGCCGCCA ----.........---------.....(((((..((..(((((.........(((((((....)))).))).)))))((((((.......))))))))..))))). ( -18.90) >DroPer_CAF1 20608 94 + 1 U-UGCUGUUUU-----------CUCUAGGUGGAAAUGCCACAUUCCCCAAUCUGCUGAACAACUUUGUGCAUGUGUGCAUGUACUUCUAUUACAUGAUGUCCGCCA .-.........-----------.....((((((.(((.............((....))........(((((((....)))))))........)))....)))))). ( -20.00) >consensus U_UCCAAUUUCAUU_________U_CAGGCGGAAAUGCCACAUUCCCCAAUCUGCUGAACAACUUUGUGCAUGUGUGCAUGUACUUCUACUACAUGAUGUCCGCCA ...........................(((((..................((....))........(((((((....)))))))................))))). (-16.73 = -16.82 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:36 2006