Locus 6973

Sequence ID 3R_DroMel_CAF1
Location 18,385,827 – 18,385,918
Length 91
Max. P 0.524047
window11307

overview

Window 7

Location 18,385,827 – 18,385,918
Length 91
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 80.59
Mean single sequence MFE -19.93
Consensus MFE -17.46
Energy contribution -18.02
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -1.09
Structure conservation index 0.88
SVM decision value -0.02
SVM RNA-class probability 0.524047
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18385827 91 - 27905053
---AUCCCUGA----UAUUCCCACGCAGAUCCCCGCACCAAUGACUGGUUCCUGAUCAAGUCGCCACUGCCCCUGCUGGGCAUCCUGGCCUUCUAUCU
---......((----((..........((((...(.((((.....)))).)..)))).....((((.(((((.....)))))...))))....)))). ( -21.60)
>DroVir_CAF1 12842 82 - 1
----------------UCUCUUAUAUAGAUCCGCGUACCAAUGACUGGUUCCUGAUCAAAUCGCCGUUGCCGCUGCUGACCAUCCUGGCCUUCUAUCU
----------------...........((((.(.(.((((.....)))).)).)))).....((((.((...(....)..))...))))......... ( -11.40)
>DroSim_CAF1 5678 91 - 1
---AUCCCUGG----CAUUCCCUUGCAGAUCCCCGCACCAAUAACUGGUUCCUGAUCAAGUCGCCACUGCCCCUGCUGGGCAUCCUGGCCUUCUAUCU
---.......(----((......))).((((...(.((((.....)))).)..)))).....((((.(((((.....)))))...))))......... ( -22.90)
>DroEre_CAF1 7419 95 - 1
---AUCUAUGCUAUCCAUUCCCACGUAGAUCCCCGCACCAAUGACUGGUUCCUGAUCAAGUCGCCACUGCCCCUGCUGGGCAUCCUGGCCUUCUACCU
---.....................(((((.............((((((((...)))).))))((((.(((((.....)))))...))))..))))).. ( -22.60)
>DroYak_CAF1 6258 82 - 1
---AU-------------ACCCACGCAGAUCCCCGCACCAAUGACUGGUUCCUGAUCAAGUCGCCACUGCCCCUGCUGGGCAUCCUGGCCUUCUACCU
---..-------------.........((((...(.((((.....)))).)..)))).....((((.(((((.....)))))...))))......... ( -20.00)
>DroAna_CAF1 7262 96 - 1
UUAAUUUGUGU--CUCAUUGUCAUGUAGAUCCCCGCACCAAUGACUGGUUCCUGAUCAAGUCGCCCCUGCCCUUGCUGGGCAUCCUGGCCUUUUACUU
.......(((.--(.....).)))(((((((...(.((((.....)))).)..)))).....(((..(((((.....)))))....)))....))).. ( -21.10)
>consensus
___AUC__UG_____CAUUCCCACGCAGAUCCCCGCACCAAUGACUGGUUCCUGAUCAAGUCGCCACUGCCCCUGCUGGGCAUCCUGGCCUUCUACCU
...........................((((...(.((((.....)))).)..)))).....((((.(((((.....)))))...))))......... (-17.46 = -18.02 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:33 2006