Locus 6972

Sequence ID 3R_DroMel_CAF1
Location 18,384,817 – 18,384,928
Length 111
Max. P 0.580041
window11306

overview

Window 6

Location 18,384,817 – 18,384,928
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.62
Mean single sequence MFE -37.50
Consensus MFE -23.95
Energy contribution -24.23
Covariance contribution 0.28
Combinations/Pair 1.23
Mean z-score -2.40
Structure conservation index 0.64
SVM decision value 0.09
SVM RNA-class probability 0.580041
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18384817 111 - 27905053
CAGGUGGUCGGUGUGCUUUACCCUGCCCAACGCGGUGUUCUUCUACUUCCUGUUCAACGACUUCUACCAGAAGUCCUACAAGAAGAAGCAGGCUGCUGCCAAGGAG---AAGG------C
..((..(.((((.(((((.((.((((.....)))).)).......((((.(((.....((((((.....))))))..))).))))))))).)))))..))......---....------. ( -35.80)
>DroPse_CAF1 4790 117 - 1
CCGGUGGUCUGUCUGCUUCACCCUGCCCAAUGCGGUCUUCUUCUACUUCCUCUUCAACGACUUCUACCAGAAGUCCUACAAGAAGAAGCAGGCGGCUGCCCAGGCC---AAGGCCGACGC
..((..(.(((((((((((...((((.....))))...............((((....((((((.....))))))....)))).))))))))))))..))..(((.---...)))..... ( -44.00)
>DroGri_CAF1 7085 111 - 1
AAGAUGGUCAGUCUGCUUCACACUGCCCAAUGCCGUCUUCUUCUACUUCCUGUUCAAUGAUUUCUACCAGAAAUCAUACAAGAAGAAACAGGCGGCUGCCAAGGCA---AAGG------C
....(((.((((.((...)).)))).)))..(((((((((((((((.....))...((((((((.....))))))))...))))))...)))))))(((....)))---....------. ( -33.80)
>DroWil_CAF1 4710 114 - 1
CAGAUGGUCGGUCUGCUUCACUUUGCCAAAUGCUGUGUUCUUCUAUUUCUUGUUUAAUGAUUUCUAUCAAAAGUCAUACAAGAAGAAGCAGGAGGCUGCCAAGAAGGCCAAAG------C
....(((((..(((((........)).....((.((.((((.((.((((((((...(((((((.......))))))))))))))).)).)))).)).))..))).)))))...------. ( -30.50)
>DroMoj_CAF1 7799 111 - 1
GAGAUGGUCCGUCUGCUUCACCCUGCCCAAUGCCGUCUUCUUCUACUUCCUCUUCAAUGACUUCUAUCAGAAGUCCUACAAGAAGAAGCAGGCGGCGGCCAAGGCC---GAGG------C
.(((((...)))))(((((............(((((((.(((((......((((....((((((.....))))))....))))))))).)))))))(((....)))---))))------) ( -40.50)
>DroPer_CAF1 4754 117 - 1
CCGGUGGUCUGUCUGCUUCACCCUGCCCAAUGCCGUCUUCUUCUACUUCCUCUUCAACGACUUCUACCAGAAGUCCUACAAGAAGAAGCAGGCGGCUGCCCAGGCC---AAGGCCGACGC
..((..(.(((((((((((.....((.....)).................((((....((((((.....))))))....)))).))))))))))))..))..(((.---...)))..... ( -40.40)
>consensus
CAGAUGGUCGGUCUGCUUCACCCUGCCCAAUGCCGUCUUCUUCUACUUCCUCUUCAACGACUUCUACCAGAAGUCCUACAAGAAGAAGCAGGCGGCUGCCAAGGCC___AAGG______C
.....((((((((((((((.....((.....)).........................((((((.....)))))).........)))))))))))..))).................... (-23.95 = -24.23 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:32 2006