Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,379,052 – 18,379,153 |
Length | 101 |
Max. P | 0.774921 |
Location | 18,379,052 – 18,379,153 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 77.49 |
Mean single sequence MFE | -25.27 |
Consensus MFE | -13.01 |
Energy contribution | -13.70 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.06 |
Mean z-score | -2.28 |
Structure conservation index | 0.51 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774921 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18379052 101 + 27905053 GCAUACGAAUGGGUCUGGGAAUGGCAAUACC----UAUAUCUAUAUAGCUAUAUGGCUAUAUGGCUAUAUGUCUAUAUGGCUAUAUGGCUAAGGGAAGGCGAAGU- ((......((((((.((((.((....)).))----)).)))))).((((((((((((((((((((.....).))))))))))))))))))).......)).....- ( -36.50) >DroSec_CAF1 43274 77 + 1 GCAUACGAAUGGGUCUGGGAAUGGCAAUACC----UAUAUCUAUAUAGCUAUAUAG------------------------CUAUAUGGCUAAGGGAAGGCGAAGU- ((..........(((.......)))....((----(.((.((((((((((....))------------------------)))))))).)).)))...)).....- ( -19.90) >DroSim_CAF1 44589 85 + 1 GCAUACGAAUGGGUCUGGGAAUGGCAACACC----UAUAUCUAUAUAUCUAUAUAGCUUUAUG----------------GCUAUAUGGCUAAGGGAAGGCGAAGU- ((......((((((.((((..((....))))----)).)))))).((.((((((((((....)----------------))))))))).)).......)).....- ( -24.10) >DroYak_CAF1 44693 87 + 1 GCAUACGAAUGGGUCUGGGAAUGGCUACGCCGUGCUAUA---GUAUACCUAUAUUGCUAUAUA----------------GCUAUAUGGUUAAGGGAAGGCGAUGUC ((((.......((((.......)))).((((((((....---)))).(((.....(((((((.----------------...)))))))...)))..)))))))). ( -20.60) >consensus GCAUACGAAUGGGUCUGGGAAUGGCAACACC____UAUAUCUAUAUAGCUAUAUAGCUAUAUG________________GCUAUAUGGCUAAGGGAAGGCGAAGU_ ((..........(((.......)))....................((((((((((((......................)))))))))))).......))...... (-13.01 = -13.70 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:31 2006