Locus 6970

Sequence ID 3R_DroMel_CAF1
Location 18,378,808 – 18,378,902
Length 94
Max. P 0.865543
window11304

overview

Window 4

Location 18,378,808 – 18,378,902
Length 94
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 92.36
Mean single sequence MFE -35.98
Consensus MFE -27.50
Energy contribution -27.75
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.90
Structure conservation index 0.76
SVM decision value 0.85
SVM RNA-class probability 0.865543
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18378808 94 + 27905053
CAGAAGGUGCUGGGGUUACCCAAA-AAAGGGAAGCUGCCAUCCAAAAGGGGCGUAGCCAGAAGGGGGAUCAACGUCAGCAGCUGC---GAAGGCAGCC
.......((((((.(((.(((...-....((..((.(((..((....)))))))..)).....)))....))).))))))(((((---....))))). ( -35.30)
>DroSec_CAF1 43039 94 + 1
CAGAAUGUGCUGGGGUUUCCCAAA-AAGGGGGAUCUGCCAUCCAAAAGGGGCGUAGCAAAAAGGGGGAUCAACGUCAGCAGCUGC---GAAGGCAGCC
.......((((((.(((((((...-..))))(((((.((.(((....)))((...)).....)).)))))))).))))))(((((---....))))). ( -38.10)
>DroSim_CAF1 44350 95 + 1
CAGAAGGUGCUGGGGUUUCCCAAAAAAGGGGGAGCUGCCAUCCAAAAGGGGCGUAGCAAAAGGGGGGAUCAACGUCAGCAGCUGC---GAAGGCAGCC
.......((((((.(((((((........))))(((((..(((....)))..))))).............))).))))))(((((---....))))). ( -36.50)
>DroYak_CAF1 44436 95 + 1
CAGAAGGUGCUGGGGUUUCCCAAA-AAAGGGGA-CUGCCAUCCAAAGGGGGCGUAGCAA-AAGGGGGAUCAACGUCAGCAGCUGCGACGAAGGCAGCC
.......((((((.(((((((...-..((....-))(((.(((...)))))).......-....))))..))).))))))(((((.......))))). ( -34.00)
>consensus
CAGAAGGUGCUGGGGUUUCCCAAA_AAAGGGGAGCUGCCAUCCAAAAGGGGCGUAGCAAAAAGGGGGAUCAACGUCAGCAGCUGC___GAAGGCAGCC
.......((((((.(((((((.......((....))(((..((....)))))............))))..))).))))))(((((.......))))). (-27.50 = -27.75 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:30 2006