Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,489,048 – 2,489,140 |
Length | 92 |
Max. P | 0.641585 |
Location | 2,489,048 – 2,489,140 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 77.11 |
Mean single sequence MFE | -17.65 |
Consensus MFE | -13.75 |
Energy contribution | -13.78 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.22 |
Mean z-score | -0.89 |
Structure conservation index | 0.78 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641585 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2489048 92 + 27905053 GCCGAUCCC--UAACGCUGAUCCUUAGCUGUCGCAGCUAAUCAUUGUGAGAGUUCA------AAUCCUCGCCAGCUCAUCUACCCCAAGUCGCUCUCCCU .........--....((((....(((((((...))))))).....(((((..(...------.)..)))))))))......................... ( -16.80) >DroSec_CAF1 16510 92 + 1 GUCGAUCCC--UAACGCUGAUCCUUAGCUGUCGCAGCUAAUCAUUGUGAGAUUUCC------GAUCCUCGCCAGCUCAUCUACCCCAAGCCUCCCUCCCU .........--....((((....(((((((...))))))).....(((((......------....)))))))))......................... ( -16.50) >DroSim_CAF1 16608 92 + 1 GUCGAUCCC--UAACGCUGAUCCUUAGCUGUCGCAGCUAAUCAUUGUGAGAUUUCC------GAUCCUCGCCAGCUCAUCUACCCCAAGCCUCCCUCCCU .........--....((((....(((((((...))))))).....(((((......------....)))))))))......................... ( -16.50) >DroEre_CAF1 17895 81 + 1 GCCAAUCCC--UAACGCUGAUCCUUAGCUGUCGCAGCUAAUCAUUGUGAGAGUUCC------GAUCCUCGCCGGCUCAUCUACCCCA-AA---------- (((......--......((((...((((((...))))))))))..(((((..(...------.)..))))).)))............-..---------- ( -16.90) >DroYak_CAF1 17630 82 + 1 GCCGAUCCC--UAAUGCUGAUCCUUAGCUGUCGCAGCUAAUCAUUGUGAGAGUUCC------GAUCCUCGCCGGCUUAUCUCCCCCAAAA---------- ((((.....--......((((...((((((...))))))))))..(((((..(...------.)..)))))))))...............---------- ( -18.70) >DroPer_CAF1 15318 84 + 1 AACGAUCCCCUCGGUGUUGAUCUCUAGCUGUCGCAGCUAAUCAUUGUGAGAGUUUAGGACCCCAUACUCGUAGGAUAUUC-ACCC--------------- ....((((...((((((.(.(((..((((.((((((.......)))))).))))..)))..).)))).))..))))....-....--------------- ( -20.50) >consensus GCCGAUCCC__UAACGCUGAUCCUUAGCUGUCGCAGCUAAUCAUUGUGAGAGUUCC______GAUCCUCGCCAGCUCAUCUACCCCAAGA__________ ...............((((....(((((((...))))))).....(((((..((........))..)))))))))......................... (-13.75 = -13.78 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:42 2006