Locus 6969

Sequence ID 3R_DroMel_CAF1
Location 18,376,895 – 18,376,998
Length 103
Max. P 0.947356
window11303

overview

Window 3

Location 18,376,895 – 18,376,998
Length 103
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 78.80
Mean single sequence MFE -28.82
Consensus MFE -17.69
Energy contribution -17.05
Covariance contribution -0.64
Combinations/Pair 1.16
Mean z-score -2.39
Structure conservation index 0.61
SVM decision value 1.37
SVM RNA-class probability 0.947356
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18376895 103 + 27905053
CAUUGAGGCGGCCAAAUCUAAACGAUUUGAACUUGUAAUCGAUUGCGAUUCAAUUUGCAGCUG------CACUAGC-CAAAUGGCCUUCAAUA------GC-ACCAAGCAAAUGGCC
.(((((((((((((((((.....))))))..............(((((......)))))))))------)....((-(....))).)))))).------((-.....))........ ( -25.90)
>DroPse_CAF1 46126 102 + 1
CAUUGGGGCGGCCAAAACUAAACGUUUUGAACUUGUAAUCGAUUGCAAUUCAAUUCGCAGCUG------CAUCAGG-UGCCUGGCCUCCAUCU------GCACCCCAUCAUUUGA--
...(((((.(((((.........(..(((((.((((((....)))))))))))..)(((.(((------...))).-))).)))))..(....------)..)))))........-- ( -28.70)
>DroEre_CAF1 42229 103 + 1
CAUUGAGGCGGCCAAAUCUAAACGAUUUGAACUUGUAAUCGAUUGCGAUUCAAUUUGCAGCUG------CACCAGC-CAAAUGGCCUUCAAUA------AC-CGCCAACAAAUGGCC
.(((((((((((((((((.....))))))..............(((((......)))))))))------)....((-(....))).)))))).------..-.((((.....)))). ( -29.30)
>DroYak_CAF1 42267 111 + 1
CAUUGAGGCGGCCAAAUCUAAACGAUUUGAACUUGUAAUCGAUUGCGAUUCAAUUUGCAGCUGCAUUUGCACCAGCACAACUGGCCUUCAAUA------ACCCGCCAACAAAUGGCC
.(((((((((((((((((.....))))))..............(((((......)))))))))).......((((.....))))..)))))).------....((((.....)))). ( -29.30)
>DroAna_CAF1 53026 97 + 1
CAUUGAGGCGGCCAAAUCUAAACGAUUUGAACUUGUAAUCGAUUGCAAUUCAAUUUGCAGCUG------CAU---------UGGCCUUCAGGCCACUUCUCAAGCCAACACA-----
..((((((((((((((((.....))))))..............(((((......)))))))))------)..---------(((((....)))))...))))).........----- ( -31.00)
>DroPer_CAF1 53174 102 + 1
CAUUGGGGCGGCCAAAACUAAACGUUUUGAACUUGUAAUCGAUUGCAAUUCAAUUCGCAGCUG------CAUCAGG-UGCCUGGCCUCCAUCU------GCACCCCAUCAUUUGA--
...(((((.(((((.........(..(((((.((((((....)))))))))))..)(((.(((------...))).-))).)))))..(....------)..)))))........-- ( -28.70)
>consensus
CAUUGAGGCGGCCAAAUCUAAACGAUUUGAACUUGUAAUCGAUUGCAAUUCAAUUUGCAGCUG______CACCAGC_CAACUGGCCUUCAAUA______GCACCCCAACAAAUGG__
...(((((((..((((((.....))))))..)..........((((((......)))))).......................))).)))........................... (-17.69 = -17.05 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:29 2006