Locus 6968

Sequence ID 3R_DroMel_CAF1
Location 18,374,851 – 18,374,956
Length 105
Max. P 0.857558
window11302

overview

Window 2

Location 18,374,851 – 18,374,956
Length 105
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 80.54
Mean single sequence MFE -23.50
Consensus MFE -14.14
Energy contribution -12.98
Covariance contribution -1.16
Combinations/Pair 1.42
Mean z-score -2.14
Structure conservation index 0.60
SVM decision value 0.81
SVM RNA-class probability 0.857558
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18374851 105 - 27905053
UCAAUUUCACGCACUUAC-UCUCACCA-GUCUCCCAGAUUCCCAGGUGAUUUGUGUGACCCAUGGUGAUCCAUGUACUC-CACCCACGUGCUAAGUGCCCGGUCAAAU
..........(((((((.-..((((((-(((.(.(((((((....).)))))).).)))...)))))).....((((..-.......))))))))))).......... ( -24.90)
>DroSec_CAF1 39335 96 - 1
UCAAUUUCACGCACUUAC-UCUUGCCA-GUCUCCCAGACUCCCAGGUGAUUUGUGUGACCCA----------UGCACUCCCACCCACGUGCUAAGUGCCCGGUCAAAU
........(((((..(.(-.((((..(-(((.....))))..)))).))..)))))((((..----------.(((((..(((....)))...)))))..)))).... ( -25.60)
>DroSim_CAF1 40625 96 - 1
UCAAUUUCACGCACUUAC-UCUCACCA-GUCUCCCAGAUUCCCAGGUGAUUUGUGUGACCCA----------UGCACUCCCACCCACGUGCUAAGUGCCCGGUCAAAU
..........((((....-..((((((-(((.....))))....)))))...))))((((..----------.(((((..(((....)))...)))))..)))).... ( -23.50)
>DroEre_CAF1 40354 98 - 1
UCGAUUUCACGCACUUAC-UCUCACCG-GUCUC-CCGAUUCCCAGGUGAUCUGUGUGACCCAUG-G-----CUGUGCUC-CACACACGUGCUAAGUGCCCGGUCAAAU
..((((....(((((((.-((.(((.(-(((.(-(.(.....).)).)))).))).))..((((-.-----.((((...-))))..)))).)))))))..)))).... ( -26.70)
>DroYak_CAF1 40375 91 - 1
UAAAUUUCACGCACUUAAUUUUCACCUAAUCUCCCCGAUUCCCAGGUGAUAUGUGUGACCCAUGGG-----CUGUACUC-CACACAAAUAU-----------UCAAAU
......(((((((........((((((((((.....))))...))))))..)))))))....((((-----......))-)).........-----------...... ( -16.80)
>consensus
UCAAUUUCACGCACUUAC_UCUCACCA_GUCUCCCAGAUUCCCAGGUGAUUUGUGUGACCCAUG________UGUACUC_CACCCACGUGCUAAGUGCCCGGUCAAAU
......(((((((........(((((..(((.....))).....)))))..)))))))...............((((..........))))................. (-14.14 = -12.98 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:28 2006