Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,359,394 – 18,359,491 |
Length | 97 |
Max. P | 0.938662 |
Location | 18,359,394 – 18,359,491 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.67 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -19.55 |
Energy contribution | -20.13 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.04 |
Mean z-score | -1.74 |
Structure conservation index | 0.67 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938662 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18359394 97 + 27905053 -----------------------CCAAUACCAACCUUGGUGCGCAGAUCCUCGUGCUCCACGAAGAAGUUGACCAUCCGGUCAACAAUGGUCGUCGUCUCGUUCAGUCUGACCGACAUAU -----------------------.....((((..(.(((.((((........)))).))).).....(((((((....)))))))..)))).((((((...........)).)))).... ( -28.70) >DroPse_CAF1 28882 115 + 1 UAGGCACUAGUC-----CGCUCUGAAGGACUCACCUUUGUGCGCAGAUCCUCGUGCUCCACAAAGAAGUUGACCAUCCGGUCAACAAUAGUGUUCGUCUCGUUCAGUCUGACCGACAUCU ..((((((((((-----(........))))....(((((((.((((.....).)))..)))))))..(((((((....)))))))..))))))).(((..(((......))).))).... ( -35.90) >DroWil_CAF1 28109 97 + 1 -----------------------UCUUCGCUCACCUUUGUGCGCAAAUCCUCGUGCUCAACAAAGAAGUUGACCAUCUUGUCAACAAUUGUUUGGGUCUCGUUUAGUCUGACCGACAUUU -----------------------.....(((((.((((((((((........))))...))))))..((((((......)))))).......)))))........(((.....))).... ( -22.20) >DroMoj_CAF1 28311 117 + 1 ---UCAUCUCAUCCAACUAACAACUUUUACAGACCUUUGUGCGCAGAUCCUCGUGCUCCACGAAGAAGUUGACCAUCUUGUCAACAAUAGUUUGUGUCUCGUUCAGUCUGACCGACAUAU ---..........................(((((...((.(((((((((.(((((...))))).)).((((((......)))))).....)))))))..))....))))).......... ( -25.50) >DroAna_CAF1 33587 113 + 1 UAUAAAG--UUC-----UUCUCCCGCAUACUCACCUUGGUGCGCAGAUCCUCGUGCUCCACAAAGAAGUUGACCAUUCGGUCAACAAUGGUUUGUGUCUCGUUCAGUCUGACCGACAUUU .......--...-----......((.((((..(((.(((.((((........)))).))).......(((((((....)))))))...)))..))))..))....(((.....))).... ( -28.10) >DroPer_CAF1 35837 115 + 1 UAGGCACUAGUC-----CGCUCUGAAGGACUCACCUUUGUGCGCAGAUCCUCGUGCUCCACAAAGAAGUUGACCAUCCGGUCAACAAUAGUGUUCGUCUCGUUCAGUCUGACCGACAUCU ..((((((((((-----(........))))....(((((((.((((.....).)))..)))))))..(((((((....)))))))..))))))).(((..(((......))).))).... ( -35.90) >consensus ____CA____UC_______CUC_CAAAUACUCACCUUUGUGCGCAGAUCCUCGUGCUCCACAAAGAAGUUGACCAUCCGGUCAACAAUAGUUUGCGUCUCGUUCAGUCUGACCGACAUAU ..................................((((((((((........))))...))))))..(((((((....)))))))..........(((..(((......))).))).... (-19.55 = -20.13 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:21 2006