Locus 6964

Sequence ID 3R_DroMel_CAF1
Location 18,342,733 – 18,342,824
Length 91
Max. P 0.630836
window11293

overview

Window 3

Location 18,342,733 – 18,342,824
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 94.14
Mean single sequence MFE -20.48
Consensus MFE -17.41
Energy contribution -18.98
Covariance contribution 1.56
Combinations/Pair 1.04
Mean z-score -1.65
Structure conservation index 0.85
SVM decision value 0.20
SVM RNA-class probability 0.630836
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18342733 91 - 27905053
GUGGCUGUUGCUUUAGCUAUUAUUUGUGGUUAAAUUCUUGUUUAGCCCUCUUAGCAGCCAUUUUGAGGAAUGUUUUUAUCGAGUGAUUUGU
(((((((((((....))..........((((((((....)))))))).....)))))))))(((((.(((....))).)))))........ ( -22.50)
>DroSec_CAF1 7220 91 - 1
GUGGCUGUUGCUCUAGCUAUUAUUUGUGGUUAAAUUCUUUUUUAGCCCUCUUAGCAGCCAUUUUGAGGAAUGUUAAUGUCGAGUGAUUUGU
(((((((((((....))..........(((((((......))))))).....)))))))))(((((.(........).)))))........ ( -20.20)
>DroSim_CAF1 7248 91 - 1
GUGGCUGUUGCUCUAGCUAUUAUUUGUGGUUAAAUUCUUUUUUAGCCCUCUUAGCAGCCAUUUUGAGGAAUGUUUAUGUCGAGUGAUUUGU
(((((((((((....))..........(((((((......))))))).....)))))))))(((((.(........).)))))........ ( -20.20)
>DroEre_CAF1 8275 90 - 1
GUGGCUCUCGCUUUAUCUAUUAUUUGUGGUUAAAUUCUUU-UUAGCCCUCUUAGCAGCCAUUUCGAGGAAUGUUUUUGUCGAGUGAUUUGU
((((((...(((.............(.(((((((.....)-)))))))....)))))))))(((((.(((....))).)))))........ ( -19.03)
>consensus
GUGGCUGUUGCUCUAGCUAUUAUUUGUGGUUAAAUUCUUUUUUAGCCCUCUUAGCAGCCAUUUUGAGGAAUGUUUAUGUCGAGUGAUUUGU
(((((((((((....))..........(((((((......))))))).....)))))))))(((((.(((....))).)))))........ (-17.41 = -18.98 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:20 2006