Locus 6962

Sequence ID 3R_DroMel_CAF1
Location 18,334,454 – 18,334,564
Length 110
Max. P 0.764819
window11288

overview

Window 8

Location 18,334,454 – 18,334,564
Length 110
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 88.69
Mean single sequence MFE -25.71
Consensus MFE -20.52
Energy contribution -20.72
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.80
SVM decision value 0.51
SVM RNA-class probability 0.764819
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18334454 110 - 27905053
CCCAGUGAAAUUUAGCUUCCU--UCCUUUUGCGACAGCGCCAUCUGCUGCCCAAAUUCCAACUCAUUCCAUUCC------GGAUGGCAGCUGCUCUGCGCAUCUCUUGCUCUGUGCCC
....(..(((...((....))--...)))..)((((((((((((((...........................)------))))))).)))).)).(((((..........))))).. ( -23.53)
>DroSec_CAF1 20610 110 - 1
CCCAGUGAGAUUUCGCUUCCU--UCCUCUUGCGACAGCGCCAUCUGCUGCCCAAAUUCCAACUCAUUCCAUGCC------GGAUGGCAUCUGCUCUGCGCAUCUCUUGCUCUGUGCCC
...((((((...((((.....--.......))))(((((.....)))))............))))))..(((((------....)))))..((.(.(.(((.....))).).).)).. ( -24.10)
>DroSim_CAF1 21083 101 - 1
CCCAGUGAAAUUUCGCUUCCUUUUCCUUUUGCGACAGCGCCAUCUGCUGCCCAAAUUCCAACUCAUUCCAUUCC------GGAUGGCAGCUGCUCUGCGCAUCUCU-----------C
...(((((....)))))............((((.(((.((.....((((((.....(((...............------))).)))))).)).))))))).....-----------. ( -25.66)
>DroEre_CAF1 20990 110 - 1
CCCAGUGAAAUUUAGCUUCCU--UCCUUUUGCGACAGCGCCAUCUGCUGCCCAAAUUCCAACUCAUUCCAUUCC------GGAUGGCAGCUGCUCUGCGCAUCUCUCGUUGUCAGCUC
.............((((..(.--......((((.(((.((.....((((((.....(((...............------))).)))))).)).))))))).........)..)))). ( -25.55)
>DroYak_CAF1 22588 116 - 1
CCCAUCGAAAUUUAGCUUCCU--UCCUUUUGCGACAGCGCCAUCUGCUGCCCAAAUUCCAACUCAUUCCAUUCCGGAUCCGGAUGGCAGCUGCUCUGCGCAUCUCUCGUUCUGGGCCC
((((.(((......((.....--.......))....((((.....((((((....................((((....)))).))))))......)))).....)))...))))... ( -29.70)
>consensus
CCCAGUGAAAUUUAGCUUCCU__UCCUUUUGCGACAGCGCCAUCUGCUGCCCAAAUUCCAACUCAUUCCAUUCC______GGAUGGCAGCUGCUCUGCGCAUCUCUCGCUCUGUGCCC
.............................((((.(((.((.....((((((.....(((.....................))).)))))).)).)))))))................. (-20.52 = -20.72 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:15 2006