| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,332,697 – 18,332,789 |
| Length | 92 |
| Max. P | 0.993243 |
| Location | 18,332,697 – 18,332,789 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 95.11 |
| Mean single sequence MFE | -15.10 |
| Consensus MFE | -12.98 |
| Energy contribution | -12.58 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18332697 92 + 27905053 AUUUUUAUUUUUCGCUUUCUCCGCUGUUUGAUUUACCAAACGGUCGACAUAAACGCAACAAAGUAAGCUUUGUUUUUCCAUUUCUCGGUAUU .............(((((.((.((((((((......)))))))).))...))).))(((((((....))))))).................. ( -16.50) >DroSec_CAF1 18761 92 + 1 AUUUUUAUUUUUCGCUGUCUCCGUUGUUUGAUUUACCAAACGGUCGACAUAAACGCAACAAAGUUAGCUUUGUUUUUCCGUUUCUCGGUUUU .............((((((.(((((.............)))))..)))).....))(((((((....)))))))...(((.....))).... ( -17.22) >DroSim_CAF1 19215 92 + 1 AUUUUUAUUUUUCGCUUUCUCCGUUGUUUGAUUUACCAAACGGUCGACAUAAACGCAACAAAGUUAGCUUUGUUUUUCCAUUUCUCGGUUUU .............(((((...(((((((((......))))))).))....))).))(((((((....))))))).................. ( -12.90) >DroEre_CAF1 19178 92 + 1 AUUUUUAUUUUUCGCUCUCUCUGUUGUUUGAUUUACCAAACGGUCGACAUAAACGCAACAAAGUAAGCUUUGUUUUUCCAUUUCUCGGUUUU .............(((..((.((((((.((.((.(((....))).)))).....)))))).))..)))........................ ( -13.30) >DroYak_CAF1 20672 92 + 1 AUUUUUAUUUUUCGCUUUCUCUGCUGUUUGAUUUGCCAAAUGGUCGACAUAAACGCAACAAAGUUAGCUUUGUUUUUCCAUUUCUUGGUUUU .............(((((.((.((((((((......)))))))).))...))).))(((((((....)))))))...(((.....))).... ( -15.60) >consensus AUUUUUAUUUUUCGCUUUCUCCGUUGUUUGAUUUACCAAACGGUCGACAUAAACGCAACAAAGUUAGCUUUGUUUUUCCAUUUCUCGGUUUU .............((....((..(((((((......)))))))..)).......))(((((((....))))))).................. (-12.98 = -12.58 + -0.40)
| Location | 18,332,697 – 18,332,789 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 95.11 |
| Mean single sequence MFE | -17.86 |
| Consensus MFE | -14.98 |
| Energy contribution | -14.38 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.84 |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.993243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18332697 92 - 27905053 AAUACCGAGAAAUGGAAAAACAAAGCUUACUUUGUUGCGUUUAUGUCGACCGUUUGGUAAAUCAAACAGCGGAGAAAGCGAAAAAUAAAAAU ....(((.((.(((((..(((((((....)))))))...))))).))....((((((....))))))..))).................... ( -17.90) >DroSec_CAF1 18761 92 - 1 AAAACCGAGAAACGGAAAAACAAAGCUAACUUUGUUGCGUUUAUGUCGACCGUUUGGUAAAUCAAACAACGGAGACAGCGAAAAAUAAAAAU ....(((.....)))...(((((((....))))))).(((...((((..(((((.(..........)))))).)))))))............ ( -18.40) >DroSim_CAF1 19215 92 - 1 AAAACCGAGAAAUGGAAAAACAAAGCUAACUUUGUUGCGUUUAUGUCGACCGUUUGGUAAAUCAAACAACGGAGAAAGCGAAAAAUAAAAAU ....(((.((.(((((..(((((((....)))))))...))))).))....((((((....))))))..))).................... ( -18.20) >DroEre_CAF1 19178 92 - 1 AAAACCGAGAAAUGGAAAAACAAAGCUUACUUUGUUGCGUUUAUGUCGACCGUUUGGUAAAUCAAACAACAGAGAGAGCGAAAAAUAAAAAU ....((.(....))).........((((.((((((((.(((......))))((((((....))))))))))))).))))............. ( -17.10) >DroYak_CAF1 20672 92 - 1 AAAACCAAGAAAUGGAAAAACAAAGCUAACUUUGUUGCGUUUAUGUCGACCAUUUGGCAAAUCAAACAGCAGAGAAAGCGAAAAAUAAAAAU ....(((.....))).........(((..((((((((......((((((....)))))).......))))))))..)))............. ( -17.72) >consensus AAAACCGAGAAAUGGAAAAACAAAGCUAACUUUGUUGCGUUUAUGUCGACCGUUUGGUAAAUCAAACAACGGAGAAAGCGAAAAAUAAAAAU ....(((.....))).........(((..((((((((((.......))(((....)))........))))))))..)))............. (-14.98 = -14.38 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:14 2006