Locus 6960

Sequence ID 3R_DroMel_CAF1
Location 18,332,322 – 18,332,418
Length 96
Max. P 0.519370
window11285

overview

Window 5

Location 18,332,322 – 18,332,418
Length 96
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 70.11
Mean single sequence MFE -20.78
Consensus MFE -5.60
Energy contribution -6.04
Covariance contribution 0.44
Combinations/Pair 1.27
Mean z-score -1.71
Structure conservation index 0.27
SVM decision value -0.03
SVM RNA-class probability 0.519370
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18332322 96 - 27905053
CAUUUUCGAGCAUGAUUCUUUGUUGAGGCACUUAGCAAAAAUGUUGCUAAUGAACUAGAGAUUAGCUAAGCUAAUGUUACUAACUAGAA---------------UAGUGUA
.........((((.(((((..((((((....(((((((.....)))))))....)).((.((((((...)))))).))..)))).))))---------------).)))). ( -20.70)
>DroSec_CAF1 18377 96 - 1
CAUUUUGGAGCACGAUUCUUUGUUAGGGCACUUAGCAAAAAUGUGGCUAAUGAACUAGAGAUUAGCUAAGCUAAAGUUACUAACUAGAA---------------UAGAGUA
...........((.(((((..(((((...(((((((.......((((((((.........)))))))).))).))))..))))).))))---------------)...)). ( -20.10)
>DroSim_CAF1 18849 78 - 1
CAUUUUGGAGC------------------ACUUAGCAAAAAUUUUGCUAAUGAACUAGAGAUUAGCUAAGCUAAAGUUACUAACUAGAA---------------UGGUGUA
((((((((..(------------------(.(((((((.....)))))))))((((.....(((((...))))))))).....))))))---------------))..... ( -16.30)
>DroEre_CAF1 18800 105 - 1
CAUUUUCAAGUAGCAUUCUUGGUAAGGGCACUUAGCAAAAAUGUUGUAAAAAAACUAGAGAUUAGCUAAGCAAAAGUGUAUGAUUAGUUAGAGCUU------AGAAGUAUA
.((((..((((((((((.(((.((((....)))).))).))))))................((((((((.((........)).)))))))).))))------..))))... ( -21.40)
>DroYak_CAF1 20272 111 - 1
CAUUUUCGAGUAGCAUUCUUCGUUAAGGCACUUAGCGAAAAUGUUGCAAAUAAACUUGAGAUUAGCAAAGUAAUGGUGAAUAACAAGAAAGUACUUGGAAGUAGAAGUAGA
.((((((((((((((((.(((((((((...))))))))))))))))).......((((...(((.((......)).)))....)))).......))))))))......... ( -25.40)
>consensus
CAUUUUCGAGCAGCAUUCUUUGUUAAGGCACUUAGCAAAAAUGUUGCUAAUGAACUAGAGAUUAGCUAAGCUAAAGUUACUAACUAGAA_______________UAGUGUA
...............................(((((((.....)))))))....((((....((((.........))))....))))........................ ( -5.60 =  -6.04 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:12 2006