Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,485,176 – 2,485,289 |
Length | 113 |
Max. P | 0.862091 |
Location | 2,485,176 – 2,485,289 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 77.24 |
Mean single sequence MFE | -40.20 |
Consensus MFE | -19.32 |
Energy contribution | -20.30 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.33 |
Mean z-score | -2.26 |
Structure conservation index | 0.48 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2485176 113 - 27905053 GGCCAAAAAUGAGCUUGCUAUCCUCAUUCCGUGCCACCGAGUUGUGUCCCAAAACGGAGCUUCGAAGUACCACUGGGGCGCAGCCCUCAAGCAACUGCUUCUGGCCGAUGAAA- (((((.....(((((((((..........((......)).(((((((((((....((.(((....))).))..))))))))))).....)))))..)))).))))).......- ( -36.30) >DroSec_CAF1 12648 113 - 1 GGCCAAAAAUGAGGUGGCCAUCCUUAUUCCUUGCCACCGGGUUGUGUCCCAAAACGGAGCUUCGAAGUACCACUGGGGCGCUGCCCUCAAGCAGCAGCUGCUGGCAGAUGAAA- .(((.....(((((((((..............))))))((((.((((((((....((.(((....))).))..)))))))).)))))))(((((...))))))))........- ( -44.94) >DroSim_CAF1 12613 113 - 1 GGCCAAAAAUGAGGUGGCUAUCCUCAUUCCGUGCCACCGGGUUGUGUCCCAAAACGGAGCUUCGAAGUACCACUGGGGCGCUGCCCUCAAGCAGCAGCUGCUGGCCGAUGAAA- ((((.....(((((((((..............))))))((((.((((((((....((.(((....))).))..)))))))).)))))))(((((...))))))))).......- ( -49.44) >DroEre_CAF1 12687 113 - 1 GGCACGGAAUGAGGUGGCAGUCCUCAUUCCGUGCCACAGGAUUGUGUCCCAAAAUGGAGCUUCGAAGUACCACUGGGGCACAGCCCUCAAGCAGCAGCUCCUAGCCUAUGAGA- ((((((((((((((.......))))))))))))))...((.((((((((((...(((.(((....))).))).))))))))))))((((....((........))...)))).- ( -54.40) >DroWil_CAF1 18767 114 - 1 GGGACGAAAUGAGGUUUCUAUUCUCAUACCAUGCCACCGGAUUGUGUCCCAGAAUGGACAAUUAAAAUAUGGCUGGGGUGGUCAGCUUAAAAAACAAUUGUUAGACUUUGAAGC ..(((((.((((((.......))))))(((((.((((((.(((.(((((......))))).....))).))).))).)))))...............)))))............ ( -28.50) >DroAna_CAF1 12255 113 - 1 GGCCAAAAAUGAAGUAGCUAUCCUCAUUCCUUGCCACCGAAUUGUAUCUCAAAACGGAUGCAGCAAGUACCAUUGGGGUGGUGCUCUCAAACAGCAGCUUCUUGAUUACGAAA- .......(((.(((.((((.............((((((...((((((((......))))))))(((......))).))))))(((.......))))))).))).)))......- ( -27.60) >consensus GGCCAAAAAUGAGGUGGCUAUCCUCAUUCCGUGCCACCGGAUUGUGUCCCAAAACGGAGCUUCGAAGUACCACUGGGGCGCUGCCCUCAAGCAGCAGCUGCUGGCCGAUGAAA_ (((....(((((((.......)))))))....)))...((...((((((((....((.((......)).))..))))))))...))............................ (-19.32 = -20.30 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:41 2006