| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,332,163 – 18,332,282 |
| Length | 119 |
| Max. P | 0.881903 |
| Location | 18,332,163 – 18,332,282 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.20 |
| Mean single sequence MFE | -29.86 |
| Consensus MFE | -14.18 |
| Energy contribution | -15.30 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.881903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18332163 119 + 27905053 UGCCUAUGUGUGUGUGUGUCUGUUCGAGUAAUGUAAACCAAAUAUGCACACACUGGGAGAAAAGUUCCAUGUAAUACAACUCCA-AACUGCACCUUCAAAUGAGUUGUGUAGCAGAAGUC ..((((.((((((((((((.((................)).))))))))))))))))............(((.(((((((((..-................))))))))).)))...... ( -30.76) >DroSec_CAF1 18223 114 + 1 UUUGUUUGUGUGUGUGUGUGUGUUCGAGUAAUGUAAACCAAAUAUACACACACUGGGAGAAAAGUUCCAUGUCAUACAACU------CUGCACCUUCAAAUGAGUUGUGUGGCAGUAGUC ...........(((((((((((((.(.((.......))).)))))))))))))(((((......)))))((((((((((((------(.............)))))))))))))...... ( -38.72) >DroSim_CAF1 18694 115 + 1 UGUCUUUGUGUG----UGUGUGUUCGAGUAAUGUAAACCAAAUAUACGCACACUGGGAGAAAAGUUCCAUGUAAUACAACUGCA-AACUGCAACUUUAAACGAGUUGUUUAGCAGAAGUC (.(((..(((((----((((((((.(.((.......))).)))))))))))))..))).)...................((((.-....(((((((.....)))))))...))))..... ( -32.10) >DroEre_CAF1 18672 97 + 1 UG--------AGUGUGUGUGUGUUCGAGUAAUGUAAACCAAAUAUACGCACACUGGGAGAAAAGUUACGUUUAAUAAGGCUCCAUAAUUGUGCCUUCAAGUC--UUG------------- (.--------((((((((((((((.(.((.......))).)))))))))))))).)((((...((((....))))(((((..((....)).)))))....))--)).------------- ( -24.80) >DroYak_CAF1 20122 110 + 1 UG--------AGUUUGUGUGUGUUCGAGUAAUGUAAACCAAAUAUACAUAGACUGAGAGAAAAGCUA-GUUAAGUAUAACUCCA-AACUGUGCCUUUAAGUGAGUUGGGUUGCAGAAGUA ..--------((((((((((((((.(.((.......))).))))))))))))))(.(((....(((.-....)))....)))).-..((((((((...........))).)))))..... ( -22.90) >consensus UG__U_UGUGUGUGUGUGUGUGUUCGAGUAAUGUAAACCAAAUAUACACACACUGGGAGAAAAGUUCCAUGUAAUACAACUCCA_AACUGCACCUUCAAAUGAGUUGUGUAGCAGAAGUC ...........(((((((((((((.(.((.......))).)))))))))))))..((((.....))))...................((((.....(((.....)))....))))..... (-14.18 = -15.30 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:11 2006