Locus 6958

Sequence ID 3R_DroMel_CAF1
Location 18,330,903 – 18,331,015
Length 112
Max. P 0.547909
window11283

overview

Window 3

Location 18,330,903 – 18,331,015
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 88.93
Mean single sequence MFE -44.99
Consensus MFE -37.67
Energy contribution -38.00
Covariance contribution 0.33
Combinations/Pair 1.11
Mean z-score -1.66
Structure conservation index 0.84
SVM decision value 0.03
SVM RNA-class probability 0.547909
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18330903 112 - 27905053
UGGCGGUGAGCAGGUGGCAGCCUGCGUCCUGCGUCUGCCGCACUGCGCCUGCCUUCCGCAUGAUUUUGCAUUUCAAAUUAUUUCCGAGUGCAGUGGGUG--------UGGGUGCGGGAAG
..((((((((((((..((.....))..))))).)).))))).(((((((..(..(((((.......(((((((..((....))..)))))))))))).)--------..))))))).... ( -47.81)
>DroSec_CAF1 16401 112 - 1
UGGCGGUGAGCAGGUGGCAGCCUGUGUCCUGCGUCUGCCGCACUGCGCCUGCCUUCCGCAUGAUUUUGCAUUUCAAAUUAUUUCCGAGUGCAGUGUGUG--------UGGGUGCGGGAAG
..((((((.((((..(.(((........))))..))))..)))))).(((((..((((((((...((((((((..((....))..))))))))..))))--------)))).)))))... ( -45.20)
>DroSim_CAF1 16695 112 - 1
UGGCGGUGAGCAGGUGGCAGCCUGCGUCCUGCGUCUGCCGCACUGCGCCUGCCUUCCGCAUGAUUUUGCAUUUCAAAUUAUUUCCGAGUGCAGUGGGUG--------UGGGUGCGGGAAG
..((((((((((((..((.....))..))))).)).))))).(((((((..(..(((((.......(((((((..((....))..)))))))))))).)--------..))))))).... ( -47.81)
>DroEre_CAF1 16821 109 - 1
UGGCGGUGAGCAGGUGGCAGCC---AUCCUGCGUCUGCCGCACUGCGCCUGCCUUCCGCAUGAUUUUGCAUUUCAAAUUAUUUCCGAGUGCAGUGGGCG--------UGGGUGCGGAAAG
..(((((((((((((((...))---).))))).)).))))).(((((((..(..(((((.......(((((((..((....))..)))))))))))).)--------..))))))).... ( -46.31)
>DroWil_CAF1 17860 109 - 1
UGUCAGUGAGCAGGUGGC---CUUUCUUAUGUGUCUGCCGCACUGCGCCUGCCUUCCGCAUGAUUUUGCAUUUCAAAUUAUUUCCGAGUGCAAUGAGUA--------AGAGCCUAGAAGG
...(((.(.(((((((((---....(......)...))))).)))).))))(((((.((...(((((((((((..((....))..)))))))..)))).--------...))...))))) ( -28.40)
>DroYak_CAF1 17222 117 - 1
UGGCGGUGAGCAGGUGGCAGCC---AUCCUGCGUCUGCCGCACUGCGCCUGCCUUCCGCAUGAUUUUGCAUUUCAAAUUAUUUCCGAGUGCAGUGGGUGUGGAUGUGUGGGUGCGGAAAG
..(((((((((((((((...))---).))))).)).))))).(((((((..((.(((((((....((((((((..((....))..))))))))...))))))).).)..))))))).... ( -54.40)
>consensus
UGGCGGUGAGCAGGUGGCAGCCUG_GUCCUGCGUCUGCCGCACUGCGCCUGCCUUCCGCAUGAUUUUGCAUUUCAAAUUAUUUCCGAGUGCAGUGGGUG________UGGGUGCGGAAAG
.(((((.(.(((((((((((.(..........).))))))).)))).))))))((((((((....((((((((..((....))..)))))))).................)))))))).. (-37.67 = -38.00 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:10 2006