Locus 6957

Sequence ID 3R_DroMel_CAF1
Location 18,330,659 – 18,330,766
Length 107
Max. P 0.959722
window11282

overview

Window 2

Location 18,330,659 – 18,330,766
Length 107
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 93.41
Mean single sequence MFE -18.90
Consensus MFE -17.84
Energy contribution -17.84
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.94
SVM decision value 1.50
SVM RNA-class probability 0.959722
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18330659 107 - 27905053
AGAGAGUGCUAGCUACACGUUGAGAACAUUUUUCAAAAUGCCAAGCUAACAAUAGAAAAGAUGCAUCCUUAUCAAGGACACAAGCACCAGCACACAC------ACACACAGCC
.....(((((((((.((..((((((.....))))))..))...)))))...........(.(((.((((.....)))).....))).).))))....------.......... ( -19.20)
>DroSec_CAF1 16159 105 - 1
AGAGAGUGCUAGCUACACGUUGAGAACAUUUUUCAAAAUGCCAAGCUAACAAUAGAAAAGAUGCAUCCUUAUCAAGGACACAAGCACCAGCACACA--------CACACAGCC
.....(((((((((.((..((((((.....))))))..))...)))))...........(.(((.((((.....)))).....))).).))))...--------......... ( -19.20)
>DroSim_CAF1 16444 107 - 1
AGAGAGUGCUAGCUACACGUUGAGAACAUUUUUCAAAAUGCCAAGCUAACAAUAGAAAAGAUGCAUCCUUAUCAAGGACACAAGCACCAGCACACAC------ACACACAGCC
.....(((((((((.((..((((((.....))))))..))...)))))...........(.(((.((((.....)))).....))).).))))....------.......... ( -19.20)
>DroEre_CAF1 16581 103 - 1
AGAGAGUGCUAGCUACACGUUGAGAACAUUUUUCAAAAUGCCAAGCUAACAAUAGAAAAGAUGCAUCCUUAUCAAGGACACAAGCACCCGCAC----------ACACACACCA
.....(((((((((.((..((((((.....))))))..))...))))).............((..((((.....))))..)).......))))----------.......... ( -18.80)
>DroYak_CAF1 16960 113 - 1
AGAGAGUGCUAGCUACACGUUGAGAACAUUUUUCAAAAUGCCAAGCUAACAAUAGAAAAGAUGCAUCCUUAUCAAGGACACAAGCACCCCCACACACAUCCACACACACACAA
.(.(.(((((((((.((..((((((.....))))))..))...))))).............((..((((.....))))..)).)))).).)...................... ( -18.10)
>consensus
AGAGAGUGCUAGCUACACGUUGAGAACAUUUUUCAAAAUGCCAAGCUAACAAUAGAAAAGAUGCAUCCUUAUCAAGGACACAAGCACCAGCACACAC______ACACACAGCC
...(.(((((((((.((..((((((.....))))))..))...))))).............((..((((.....))))..)).)))))......................... (-17.84 = -17.84 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:09 2006