Locus 6955

Sequence ID 3R_DroMel_CAF1
Location 18,328,943 – 18,329,041
Length 98
Max. P 0.627247
window11279

overview

Window 9

Location 18,328,943 – 18,329,041
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.16
Mean single sequence MFE -21.95
Consensus MFE -16.51
Energy contribution -16.77
Covariance contribution 0.25
Combinations/Pair 1.12
Mean z-score -0.93
Structure conservation index 0.75
SVM decision value 0.19
SVM RNA-class probability 0.627247
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18328943 98 - 27905053
A------------------UUAAACCCAUA--AUGUUCUCCUAUUUUU-UUCCAGACAGUUU-CAAGUGGCACGUAAUGGGAGACCGGACCACGCAUUCCGGCCAUAAAUAAACAUUUAA
.------------------..........(--(((((((((((((...-..(((........-....))).....)))))))))(((((........)))))..........)))))... ( -20.20)
>DroSec_CAF1 14474 98 - 1
A------------------UUAAACACAUA--UCGUGCUUCUGUUUUU-UUCCAGACAGUUU-CAAGUGGCACGUGCUGGGUGACCGGACCACGCAUUCCGGCCAUAAAUAAACAUUUAA
.------------------.......((..--.((((((.((((((..-....))))))...-.....))))))...)).(((.(((((........))))).))).............. ( -22.10)
>DroSim_CAF1 14740 98 - 1
A------------------UUAAACACAUA--UUGUGCCUCUGUUUUU-UUCCAGACAGUUU-CAAGUGGCACGUGCUGGGUGACCGGACCACGCAUUCCGGCCAUAAAUAAACAUUUAA
.------------------...........--..(((((.((((((..-....))))))...-.....)))))((.....(((.(((((........))))).)))......))...... ( -22.70)
>DroEre_CAF1 14872 90 - 1
A------------------UUAAACCCAUA--UUGUACUU---------UUCCAGACAGUUU-CAAGUGGCACGUGCUGGGAGACCGGACCACGCAUUCUGGCCAUAAAUAAACAUUUAA
.------------------..........(--((((.((.---------....)))))))..-...(((((.((((((((....))))..)))).......))))).............. ( -18.30)
>DroWil_CAF1 15549 115 - 1
ACCAGACCCCGACUGUUGCUUAACUCCAUAUGUUUUAUUUCUCU-----UUUUAAGCAGUUCCCAAAUGGCUCGUGCUGCAAGGGCUGCCCACGCAUCGUGGCCAUAAAUAAACAUGUAA
..(((.......)))............((((((((.((((....-----......((((..(((...((((....))))...)))))))(((((...)))))....)))))))))))).. ( -22.30)
>DroYak_CAF1 15340 99 - 1
A------------------UUAAACCCAUA--CUGUGCUUUGGUUUUUUUCCCAGACAGUUU-CAAGUGGCACGUGCUGGGAGACCGGACCACGCAUGUUGGCCAUAAAUAAACAUUUAA
.------------------......(((.(--(.((((..((((((.((((((((...((.(-(....)).))...))))))))..)))))).))))))))).................. ( -26.10)
>consensus
A__________________UUAAACCCAUA__UUGUGCUUCUGUUUUU_UUCCAGACAGUUU_CAAGUGGCACGUGCUGGGAGACCGGACCACGCAUUCCGGCCAUAAAUAAACAUUUAA
..........................................................((((....(((((.((((((((....))))..)))).......)))))....))))...... (-16.51 = -16.77 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:06 2006