Locus 6954

Sequence ID 3R_DroMel_CAF1
Location 18,326,968 – 18,327,068
Length 100
Max. P 0.629065
window11278

overview

Window 8

Location 18,326,968 – 18,327,068
Length 100
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 93.77
Mean single sequence MFE -25.95
Consensus MFE -22.41
Energy contribution -22.80
Covariance contribution 0.39
Combinations/Pair 1.07
Mean z-score -1.48
Structure conservation index 0.86
SVM decision value 0.20
SVM RNA-class probability 0.629065
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18326968 100 - 27905053
CAAGUGGUAAACACUCAAAAGACCUCUUUACCAGCUUUUUGGGCCAACUAAUGGCUGCAAUUUCUCGCUGGC--UGGUUCAUUAUCAUGCCUGCUAUAAUGU
..(((((((........((((....))))(((((((.....(((((.....)))))((........)).)))--)))).........)))).)))....... ( -23.30)
>DroSec_CAF1 12514 100 - 1
CAAGUGGUAAACACUCAAAAGACCUCUUUACCAGCUUUUUGGGCCAACUAAUGGCUGCAAUUUCUCGCUGGC--GGGUUCAUUAUCAUGCCUGCGAUAAUGU
..((((.....)))).....(((((.....(((((...((((((((.....))))).)))......))))).--)))))(((((((........))))))). ( -26.00)
>DroSim_CAF1 12779 100 - 1
CAAGUGGUAAACACUCAAAAGACCUCUUUACCAGCUUUUUGGGCCAACUAAUGGCUGCAAUUUCUCGCUGGC--UGGUUCAUUAUCAUGCCUGCGAUAAUGU
..((((.....))))..((((....))))(((((((.....(((((.....)))))((........)).)))--)))).(((((((........))))))). ( -26.40)
>DroEre_CAF1 12898 100 - 1
CAAGUGGUAAACACUCAAAAGACCUCUUUACCAGCUUUUUGGGCCAACUAAUGGCUGCAAUUUCUCGCUGGC--UGGUUCAUUAUCAUGCCUGCGAUAAUGU
..((((.....))))..((((....))))(((((((.....(((((.....)))))((........)).)))--)))).(((((((........))))))). ( -26.40)
>DroYak_CAF1 13288 100 - 1
CAAGUGGUAAACACUCAAAAGACCUCUUUACCAGCUUUUUGGGCCAACUAAUGGCUGCAAUUUCUCGCUGGC--UGGUUCAUUAUCAUGCCUGCGAUAAUGU
..((((.....))))..((((....))))(((((((.....(((((.....)))))((........)).)))--)))).(((((((........))))))). ( -26.40)
>DroAna_CAF1 39496 101 - 1
CAAGUGGUAAACACUCUU-GGGCCUCUUCAACGGCUUUUUGGGCCAACUAAUGGCUGCAAUUUCGCGCUGCCAGUAGUUCAUUAUCAUUCCGGGCAUAAUGU
((((.(.......).)))-).((((.......((((.....))))(((((.((((.((........)).)))).)))))............))))....... ( -27.20)
>consensus
CAAGUGGUAAACACUCAAAAGACCUCUUUACCAGCUUUUUGGGCCAACUAAUGGCUGCAAUUUCUCGCUGGC__UGGUUCAUUAUCAUGCCUGCGAUAAUGU
..((((.....)))).....((((......(((((...((((((((.....))))).)))......)))))....))))(((((((........))))))). (-22.41 = -22.80 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:05 2006