Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,325,940 – 18,326,093 |
Length | 153 |
Max. P | 0.942808 |
Location | 18,325,940 – 18,326,053 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.48 |
Mean single sequence MFE | -27.63 |
Consensus MFE | -19.20 |
Energy contribution | -21.02 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.19 |
Mean z-score | -2.31 |
Structure conservation index | 0.69 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942808 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18325940 113 + 27905053 GAUUGAAUGGCAUUUCAAUUAUCUUGUUCAAUUGAAGGAAACGUUGAGUGUCAGAACGUUCGAAAGGAUAAUUGGAAAACUAACUGCCAAUGUGCAGGAA-------UGCUUUUAAAUUG ((((....(((((((((((((((((.(((.......(....)...((((((....))))))))))))))))))).........((((......)))))))-------))))....)))). ( -27.70) >DroSec_CAF1 11516 113 + 1 GAUUGAAUGGCAUUUCAAUUAUCUUGUUCAAUUGAAGGAAACGUUGAGUGUCAGAACGAUCGAAAGGAUAAUUGGAAAACUAACUGCCAAUGGGCAGGAA-------UGCUUUUAAAUUG ((((....(((((((((((((((((((((.(((.(((....).)).)))....)))))).(....))))))))).........(((((....))))))))-------))))....)))). ( -32.10) >DroSim_CAF1 11755 113 + 1 GAUUGAAUGGCAUUUCAAUUAUCUUGUUCAAUUGAAGGAAACGUUGAGUGUCAGAACGAUCGAAAGGAUAAUUGGAAAACUAACUGCCAAUGGGCAGGAA-------UGCUUUUAAAUUG ((((....(((((((((((((((((((((.(((.(((....).)).)))....)))))).(....))))))))).........(((((....))))))))-------))))....)))). ( -32.10) >DroEre_CAF1 11808 113 + 1 GAUUGAAUGGCAUUUCAAUUAUCUUGUUCAAUUGAAGGAAGCGUUGAGUGUCAAAACGAUCGAAAGGAUAAUUGGAAAACUAACUGCAAGCGCGCAGGAA-------UGCUUUUAAAAUG ..(((((.(((((((((((((((((.(((.((((...((.((.....)).))....)))).))))))))))))).........((((......)))))))-------))))))))).... ( -28.50) >DroYak_CAF1 12203 113 + 1 GAUUGAAUGGCAUUUCAAUUAUCUUGUUCAAUUGAAGGAGACGUUGAGUGUCAAAACGAUCGAAAGGAUAAUUGGAAAACUAACUGCAAGCGGGCAGGAA-------UGCUUUUAAAUUG ((((....(((((((((((((((((.(((.((((...((.((.....)).))....)))).))))))))))))).........((((......)))))))-------))))....)))). ( -30.30) >DroAna_CAF1 38510 111 + 1 GUCUUAACAACGUUUUAAUUAACAUAAAGUAUUGGAGUAAU---UAAUUACU-----AAUUGAAA-CAUAAGAUGAAGACCAAAUGGAUUAAGGUAUAAACUUCAUACCCUUUUAGAUUA ((((((.....((((((((((.((........))..((((.---...)))))-----))))))))-).))))))((((.((....)).....(((((.......)))))))))....... ( -15.10) >consensus GAUUGAAUGGCAUUUCAAUUAUCUUGUUCAAUUGAAGGAAACGUUGAGUGUCAGAACGAUCGAAAGGAUAAUUGGAAAACUAACUGCAAAUGGGCAGGAA_______UGCUUUUAAAUUG ..(((((.(((((((((((((((((.(((.((((...((.((.....)).))....)))).))))))))))))))))......((((......))))..........))))))))).... (-19.20 = -21.02 + 1.81)
Location | 18,325,980 – 18,326,093 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 88.05 |
Mean single sequence MFE | -23.94 |
Consensus MFE | -20.78 |
Energy contribution | -20.74 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.39 |
Structure conservation index | 0.87 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606240 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18325980 113 + 27905053 ACGUUGAGUGUCAGAACGUUCGAAAGGAUAAUUGGAAAACUAACUGCCAAUGUGCAGGAAUGCUUUUAAAUUGAAACUCAAUUUUAAUUGACACAGAGCAUUUUACAACUGAG ..(((((((.((((...((((....))))..))))...)))..((((......))))(((((((((..((((((((.....)))))))).....)))))))))..)))).... ( -25.70) >DroSec_CAF1 11556 113 + 1 ACGUUGAGUGUCAGAACGAUCGAAAGGAUAAUUGGAAAACUAACUGCCAAUGGGCAGGAAUGCUUUUAAAUUGAAACUCAAUUUUAAUUGACACAGUGCAUUCUACAACUGAG ..((((.(((((((.......(((((.((..((((....))))(((((....)))))..)).)))))((((((.....))))))...)))))))((......)).)))).... ( -26.10) >DroSim_CAF1 11795 113 + 1 ACGUUGAGUGUCAGAACGAUCGAAAGGAUAAUUGGAAAACUAACUGCCAAUGGGCAGGAAUGCUUUUAAAUUGAAACUCAAUUUUAAUUGACACAGUGCAUUUUACAACUGAG ..(((((((.((((.....((....))....((((((......(((((....)))))......)))))).)))).)))))))...........((((..........)))).. ( -24.60) >DroEre_CAF1 11848 113 + 1 GCGUUGAGUGUCAAAACGAUCGAAAGGAUAAUUGGAAAACUAACUGCAAGCGCGCAGGAAUGCUUUUAAAAUGAAACUCAAUUUAAAUUGACACUGUCCAUUAUCAAACUGAG ......((((((((.....((....))................((((......)))).......((((((.((.....)).)))))))))))))).................. ( -19.50) >DroYak_CAF1 12243 99 + 1 ACGUUGAGUGUCAAAACGAUCGAAAGGAUAAUUGGAAAACUAACUGCAAGCGGGCAGGAAUGCUUUUAAAUUGAAACUCAAUUUUAAUUGACACUGAC----A---------- ..(((.((((((((.......(((((.((..((((....))))((((......))))..)).)))))((((((.....))))))...)))))))))))----.---------- ( -23.80) >consensus ACGUUGAGUGUCAGAACGAUCGAAAGGAUAAUUGGAAAACUAACUGCCAAUGGGCAGGAAUGCUUUUAAAUUGAAACUCAAUUUUAAUUGACACAGUGCAUUAUACAACUGAG .......(((((((.......(((((.((..((((....))))((((......))))..)).)))))((((((.....))))))...)))))))................... (-20.78 = -20.74 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:02 2006