Locus 6948

Sequence ID 3R_DroMel_CAF1
Location 18,321,552 – 18,321,654
Length 102
Max. P 0.994590
window11268

overview

Window 8

Location 18,321,552 – 18,321,654
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 68.02
Mean single sequence MFE -20.95
Consensus MFE -13.07
Energy contribution -13.07
Covariance contribution 0.00
Combinations/Pair 1.17
Mean z-score -1.97
Structure conservation index 0.62
SVM decision value 2.49
SVM RNA-class probability 0.994590
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18321552 102 + 27905053
CGCACCUAAUAAAAAGACACGGUACUUGCUAGGAAGUACUAUUAGC-----------------AUCUUAUGGCAAUUUGCAAUGCCUUUGCUAAAAUAAAAUAAUAUAUACUUUACACU-
............((((....(((((((......))))))).(((((-----------------(......((((........))))..))))))................)))).....- ( -18.30)
>DroSec_CAF1 7283 78 + 1
CGCACCUAAUAAAGGGACAUGGUACUUCCUAUAAAGUACUAUGAGC-----------------AUCUUAUGGCAAUUUGCAAUGCCUUUGCUAAA-------------------------
.((.(((.....)))..((((((((((......)))))))))).))-----------------......((((((...((...))..))))))..------------------------- ( -21.70)
>DroSim_CAF1 7367 102 + 1
CGCACCUAAUAAAGGGACAUGGUACUUGCUAUGAAGUACUAUCAGC-----------------AUCUAAUGGCAAUUUGCAAUGCCUUUGCUAAAAUAAAAAAAAAUAUACUUUACACU-
.(..(((.....)))..)(((((((((......))))))))).(((-----------------(......((((........))))..))))...........................- ( -19.20)
>DroYak_CAF1 7814 120 + 1
CGCACCUAAUAAAUGGACAAGGUACUUAGGAAAAAGUACUUUCAGAUUAUAGUGAAGUGUUGGAUCAAAUUGCUAAUAGCAUUGCCUGUGCUAUAAUAUAAGGAUAUUUACUUUAUAUUC
....((........))..(((((((((......))))))))).......(((..(..((......))..)..)))(((((((.....)))))))(((((((((.......))))))))). ( -24.60)
>consensus
CGCACCUAAUAAAGGGACAUGGUACUUGCUAUAAAGUACUAUCAGC_________________AUCUAAUGGCAAUUUGCAAUGCCUUUGCUAAAAUAAAA_AAUAUAUACUUUACACU_
.((.(((......)))..(((((((((......))))))))).............................)).....((((.....))))............................. (-13.07 = -13.07 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:55 2006