Locus 6947

Sequence ID 3R_DroMel_CAF1
Location 18,320,674 – 18,320,777
Length 103
Max. P 0.940066
window11267

overview

Window 7

Location 18,320,674 – 18,320,777
Length 103
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 72.83
Mean single sequence MFE -25.03
Consensus MFE -14.02
Energy contribution -14.43
Covariance contribution 0.42
Combinations/Pair 1.23
Mean z-score -1.90
Structure conservation index 0.56
SVM decision value 1.31
SVM RNA-class probability 0.940066
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18320674 103 - 27905053
CAUCCACAGCAACGUGCGGCGAGACAAA--CUGAGCCCAACCGACUGGCAAUUAAAGCCGCUGAGCU---CCAGCUCUCGCACACAUAUUCACC-CGCCUUACACACAC
.............(((..((((((....--................(((.......)))((((....---.)))))))))).))).........-.............. ( -21.90)
>DroSec_CAF1 6431 78 - 1
CAUCCACAGCAACAUGCGGCGAGACAAA--CUGAGCCCAACCGACUGGCAAUUAAAGCCGCUGAGCU---CCAGCUCUCGCUC--------------------------
........((.....))(((((((....--................(((.......)))((((....---.))))))))))).-------------------------- ( -20.70)
>DroSim_CAF1 6511 78 - 1
CAUCCACAGCAACGUGCGGCGAGACAAA--CUGAGCCCAACCGACUGGCAAUUAAAGCCGCUGAGCU---CCAGCUCUCGCUC--------------------------
........((.....))(((((((....--................(((.......)))((((....---.))))))))))).-------------------------- ( -20.70)
>DroEre_CAF1 6648 103 - 1
CAUCCACAGCAACGUGCGGCGAGACAAA--CUGAGCCCAACCGACUGGCAAUUAAAGCCGCUGAGCU---CCAGCUCUCGCACACAUGUGCACC-CGCCUUACACACAC
........(((.((((.(((((((....--................(((.......)))((((....---.)))))))))).).)))))))...-.............. ( -27.80)
>DroWil_CAF1 5460 101 - 1
CAACAACAGCAACAGAAGCUGAGGCAAAUACCGGCCUCAGCCGUUGGGCAAUUAAAUUCGCUGAGCAUAUGUAACUCU-----AUAUAU--GCC-UACAUACCACAUAC
......((((..(((..((((((((........))))))))..)))((.........)))))).(((((((((....)-----))))))--)).-.............. ( -30.60)
>DroYak_CAF1 6914 104 - 1
CAUCCACAGCAACGUGCGGCGAGACAAA--CUGAGCCCAACCGACUGGCAAUUAAAGCCGCUGAGCU---CCAGCUCUCGCACACAUGUGCACCCCGUCGUAUACACAC
.............(((((((((((....--................(((.......)))((((....---.))))))))((((....)))).....)))))))...... ( -28.50)
>consensus
CAUCCACAGCAACGUGCGGCGAGACAAA__CUGAGCCCAACCGACUGGCAAUUAAAGCCGCUGAGCU___CCAGCUCUCGCACACAU_U__ACC_CGCCUUACACACAC
..................((((((......................(((.......)))((((........))))))))))............................ (-14.02 = -14.43 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:54 2006