Locus 6945

Sequence ID 3R_DroMel_CAF1
Location 18,316,465 – 18,316,570
Length 105
Max. P 0.819343
window11265

overview

Window 5

Location 18,316,465 – 18,316,570
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 79.40
Mean single sequence MFE -33.75
Consensus MFE -24.72
Energy contribution -23.63
Covariance contribution -1.08
Combinations/Pair 1.24
Mean z-score -1.53
Structure conservation index 0.73
SVM decision value 0.68
SVM RNA-class probability 0.819343
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18316465 105 - 27905053
AAUCUUUCAAAGAAGUACUCAUUUCUAAAUUUUAAGGGUCCUGGUUGAGCUGGCUCAGCUGCAGGACGAGGAGGUCGGCGAUGGCACUACCUCGGUGGUUAUCCU
..........((((((....))))))........(((((((((((((((....))))))..))))))((((((((((....)))).)).)))).........))) ( -32.80)
>DroPse_CAF1 3597 104 - 1
ACAAUGUG-AAUGAUGAUUAAUUGUGGUCUCCCAAGGGUUUUGGUUGAGCUGGCUCAGCUGCAGGACGAGGAGGUCGGAGAUGGCACCACAUCUGUGGUCAUUUU
.......(-((((((.((....((((((((((.....((((((((((((....))))))..))))))..))))((((....))))))))))...)).))))))). ( -33.60)
>DroEre_CAF1 3463 104 - 1
AACCUUUCAAACAAGUAUUCAUUU-UAAAUUUGAAGGGUCCUGGUUGAGCUGGCUCAGCUGCAGGACGAGGAGGUCGGCGAUGGCACCACCUCGGUGGUUAUCCU
...((((((((....((.......-))..))))))))((((((((((((....))))))..)))))).((((.((((....))))(((((....)))))..)))) ( -35.30)
>DroYak_CAF1 3661 104 - 1
AAUCUUUAAAACAAAUACUCAUUU-UAAAUUUGAAGGGUCCUGGUUGAGCUGGCUCAGCUGCAGGACGAGGAGGUCGGCGAUGGCACCACCUCGGUGGUUAUCCU
..((((((((..(((.......))-)...))))))))((((((((((((....))))))..)))))).((((.((((....))))(((((....)))))..)))) ( -33.10)
>DroAna_CAF1 29702 103 - 1
CCUCUAUCGAAGA--GACUUAUUUUGUUCCUUUCAGAGUUCUGGUUGAGCUGGCUCAGCUGCAGGACGAAGAGGUUGGCGAUGGCACUACUUCCGUGGUCAUUCU
(((((.((((((.--.((.......))..))))....((((((((((((....))))))..))))))))))))).((((.((((........)))).)))).... ( -34.10)
>DroPer_CAF1 3590 104 - 1
ACAAUGUG-AAUGAUGAUUAAUUGUGGUCUCCCAAGGGUUUUGGUUGAGCUGGCUCAGCUGCAGGACGAGGAGGUCGGAGAUGGCACCACAUCUGUGGUCAUUUU
.......(-((((((.((....((((((((((.....((((((((((((....))))))..))))))..))))((((....))))))))))...)).))))))). ( -33.60)
>consensus
AAUCUUUCAAACAAGGACUCAUUUUGAAAUUUCAAGGGUCCUGGUUGAGCUGGCUCAGCUGCAGGACGAGGAGGUCGGCGAUGGCACCACCUCGGUGGUCAUCCU
.....................................((((((((((((....))))))..)))))).((((.((((....))))(((((....)))))..)))) (-24.72 = -23.63 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:52 2006