Locus 6943

Sequence ID 3R_DroMel_CAF1
Location 18,310,718 – 18,310,815
Length 97
Max. P 0.762232
window11263

overview

Window 3

Location 18,310,718 – 18,310,815
Length 97
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 77.79
Mean single sequence MFE -16.88
Consensus MFE -11.88
Energy contribution -11.30
Covariance contribution -0.58
Combinations/Pair 1.27
Mean z-score -1.30
Structure conservation index 0.70
SVM decision value 0.51
SVM RNA-class probability 0.762232
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18310718 97 + 27905053
AUAUACUUUUU---------AUAUGUAUUUGAGACUAAAUAUUGUCACCGA-UCUGCGUGCAAUAUGAACUCAGACAUAUCAAGGAAAAGACAAGACAC---------ACACACUA
.....((((((---------..((((.((((((.....((((((.(((...-.....)))))))))...)))))).))))....)))))).........---------........ ( -17.50)
>DroVir_CAF1 23284 101 + 1
AUAUACUUUA-AAUAUAUGUAUAUGUAUUUGAGACUAUAUAUUGUCAUAGA-CUCUUAUGCAAUAUGAACUCGGACAUAUCAAUUC----AAAAGACAC---------GAAAUCUC
..........-......((.((((((...((((....(((((((.(((((.-...))))))))))))..)))).))))))))....----.........---------........ ( -15.40)
>DroPse_CAF1 23007 109 + 1
AUAUACUUUUUAAU--AUGUAUAUGUAUUUGAGACUAUAUAUUGCCAGUGA-CUUGUAUGCAGUAUGAACUCAGACAUAUCAAGU----GACAAGACACCAGAACACCACACUCUA
.....(((.(((..--.((.((((((...((((....(((((((((((...-.)))...))))))))..)))).))))))))..)----)).)))..................... ( -16.10)
>DroGri_CAF1 26633 100 + 1
GUAUACUUUUUAAU--AUGUAUAUGUAUUUGAGACUAAAUAUUGUCAUAGA-CUCUUAUGCAAUAUGAACUCGGACAUAUCAAUUA----AUAAGACAC---------AAACUCUU
.....(((.(((((--.((.((((((...((((.....((((((.(((((.-...)))))))))))...)))).))))))))))))----).)))....---------........ ( -19.00)
>DroMoj_CAF1 24466 100 + 1
AUAUACUUUG-AAU--AUGUAUAUGUAUUUGAGACUAUAUAUUGUCAUAGAACACUUAUGCAAUAUGAACUCUGACAUAUCAAUUA----AAAAGACAC---------CAACACCA
.....((((.-...--.((.((((((....(((....(((((((.(((((.....))))))))))))..)))..))))))))....----.))))....---------........ ( -17.20)
>DroPer_CAF1 23443 106 + 1
AUAUACUUUUUAAU--AUGUAUAUGUAUUUGAGACUAUAUAUUGCCAGUGA-CUUGUAUGCAGUAUGAACUCAGACAUAUCAAGU----GACAAGACACCAGAACACCACACU---
.....(((.(((..--.((.((((((...((((....(((((((((((...-.)))...))))))))..)))).))))))))..)----)).)))..................--- ( -16.10)
>consensus
AUAUACUUUUUAAU__AUGUAUAUGUAUUUGAGACUAUAUAUUGUCAUAGA_CUCGUAUGCAAUAUGAACUCAGACAUAUCAAGUA____ACAAGACAC_________AAACUCUA
.................((.((((((...((((....((((((((...((....))...))))))))..)))).)))))))).................................. (-11.88 = -11.30 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:50 2006