Locus 6936

Sequence ID	3R_DroMel_CAF1
Location	18,288,136 – 18,288,226
Length	90
Max. P	0.588981

overview

Window 2

Location	18,288,136 – 18,288,226
Length	90
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	89.93
Mean single sequence MFE	-21.80
Consensus MFE	-17.06
Energy contribution	-17.02
Covariance contribution	-0.04
Combinations/Pair	1.12
Mean z-score	-1.49
Structure conservation index	0.78
SVM decision value	0.11
SVM RNA-class probability	0.588981
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18288136 90 + 27905053
UAAGACCGUAUCACUUAUGGUAUAU-ACUG-ACCUCGAAGGGCCACACUAAGGGGGAGUGAAAAUUGAUUUUCUGAUAAAAAUUUUCGCUUG
....((((((.....))))))....-....-.((((..((.......))..))))(((((((((((.(((....)))...))))))))))). ( -22.70)
>DroSec_CAF1 13770 92 + 1
UAAGACCGUAUCACUUAUGGUCUAUCACUGGUCUUCGAAGGGUCACACUAAAGGGGAGUGAAAAUUGAUUUUCUGAUAAAAAUUUUCGCUUG
..((((((((.....)))))))).....((..((.....))..))..........(((((((((((.(((....)))...))))))))))). ( -24.20)
>DroSim_CAF1 14458 91 + 1
UAAGACCGUAUCACGUAUGGUAUAU-ACUGGACCUCGAAGGGUCACACUAAAGGGGAGUGAAAAUUGAUUUUCUGAUAAAAAUUUUCGCUUG
....(((((((...)))))))...(-(.(((((((....))))).)).)).....(((((((((((.(((....)))...))))))))))). ( -22.50)
>DroEre_CAF1 19828 91 + 1
AAAGACCAUUUUGCAAUUGGUAUAU-ACCGAACCUCGAACGGCCACACUAAAGGGGAGUGAAAAUUGAUUUUCUGAUAAAAAUUUUCGCUUG
.....((.(((((....((((....-..((.....))....))))...)))))))(((((((((((.(((....)))...))))))))))). ( -17.10)
>DroYak_CAF1 13811 91 + 1
UAAGACCAUUUAGCAUUUGGUAUAU-ACCGGACCUCGAACGGCCACACUAAAGGGGAGUGAAAAUUGAUUUUCUGAUAAAAAUUUUCGCUUG
.....((.(((((.....(((....-)))((.((......))))...))))).))(((((((((((.(((....)))...))))))))))). ( -22.50)
>consensus
UAAGACCGUAUCACAUAUGGUAUAU_ACUGGACCUCGAAGGGCCACACUAAAGGGGAGUGAAAAUUGAUUUUCUGAUAAAAAUUUUCGCUUG
....((((((.....))))))...........((((....((.....))...))))((((((((((.(((....)))...)))))))))).. (-17.06 = -17.02 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:40 2006