Locus 6935

Sequence ID 3R_DroMel_CAF1
Location 18,284,436 – 18,284,534
Length 98
Max. P 0.779521
window11251

overview

Window 1

Location 18,284,436 – 18,284,534
Length 98
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 75.68
Mean single sequence MFE -23.35
Consensus MFE -13.24
Energy contribution -14.55
Covariance contribution 1.31
Combinations/Pair 1.06
Mean z-score -1.95
Structure conservation index 0.57
SVM decision value 0.55
SVM RNA-class probability 0.779521
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18284436 98 + 27905053
ACCACCGCCACUACCAGUGGCAUCAACGCCGCACCACCCGCAUCAUCACCAUCACUUGGGACAACCGUUGCCCAAUCUUUUGGUGCAGCACCAUCCGG
....(((((((.....)))))......((.((((((...(......)........(((((.((.....))))))).....)))))).)).......)) ( -27.30)
>DroSec_CAF1 10007 98 + 1
ACCACCGCCACUCCCGGUGGCAUCAACGCCGCACCACCCGCAUCAUCACCACCACAUGGGACAACCGUUGCCCAAUCUUCUGGUGCAGCACCAUCCGA
......(((((.....)))))......((.((((((...(......).........((((.((.....))))))......)))))).))......... ( -25.60)
>DroSim_CAF1 10781 98 + 1
ACCACCGCCACUCCCGGUGACAUCAACACCGCACCACCCGCAUCAUCACCACCACUUGGGACAACCGCUGCCCAAUCUUCUGGUGCAGCACCACCCGG
....(((....((((((((.......))))((.......))................)))).....((((((((......))).)))))......))) ( -27.30)
>DroWil_CAF1 38075 78 + 1
--CACCGCCUCC------GCCUUCAGCGCCA---------CUUC---AUCAUCACCUGCCGCAGUCGUUGCCCAAUUUGGUAGUGCAGCAUCAUCCGG
--..(((....(------((.....)))...---------....---.........(((.(((....(((((......)))))))).))).....))) ( -13.20)
>consensus
ACCACCGCCACUCCCGGUGGCAUCAACGCCGCACCACCCGCAUCAUCACCACCACUUGGGACAACCGUUGCCCAAUCUUCUGGUGCAGCACCAUCCGG
......(((((.....)))))...........................(((.....))).......((((((((......))).)))))......... (-13.24 = -14.55 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:38 2006