Locus 6932

Sequence ID 3R_DroMel_CAF1
Location 18,281,198 – 18,281,289
Length 91
Max. P 0.818308
window11245

overview

Window 5

Location 18,281,198 – 18,281,289
Length 91
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 88.80
Mean single sequence MFE -22.88
Consensus MFE -18.35
Energy contribution -18.16
Covariance contribution -0.19
Combinations/Pair 1.23
Mean z-score -2.67
Structure conservation index 0.80
SVM decision value 0.67
SVM RNA-class probability 0.818308
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18281198 91 - 27905053
CACAAACAGGCGUACAU----ACAUCGCA----UAUGUACGACUGUAUGUAAAUACA---AUAUUAAAUCGCCGAUCAGCAACAGACAAACUUGGUUGCUUA
.(((.((((.(((((((----(.......----)))))))).)))).))).......---.................((((((...........)))))).. ( -21.30)
>DroSec_CAF1 6761 91 - 1
CACAAACAGGCGUACAU----ACAUCGCA----UAUGUACGACUGUAUGUAAAUACA---AUAUUAAAUCGCCGAUCAGCAACAGACAAACUUGGUUGCUUA
.(((.((((.(((((((----(.......----)))))))).)))).))).......---.................((((((...........)))))).. ( -21.30)
>DroSim_CAF1 7522 91 - 1
CACAAACAGGCGUACAU----ACAUCGCA----UAUGUACGACUGUAUGUAAAUACA---AUAUUAAAUCGCCGAUCAGCAACAGACAAACUUGGUUGCUUA
.(((.((((.(((((((----(.......----)))))))).)))).))).......---.................((((((...........)))))).. ( -21.30)
>DroEre_CAF1 12776 99 - 1
CACAAACAGGCGUAUAUAUGUACAUCGCAUACAUAUGUACGGCUGUAUGUAAAUACA---AUAUUAAAUCGCCGAUCAGCAACAGACAAACUUGGUUGCUUA
.(((.((((.((((((((((((.......)))))))))))).)))).))).......---.................((((((...........)))))).. ( -28.60)
>DroYak_CAF1 6819 91 - 1
CACAAACAGGCGUACAU----ACAUCGCA----UAUGUACGGCUGUAUGUAAAUACA---AUAUUAAAUCGCCGAUCAGCAACAGACAAACUUGGUUGCUUA
.(((.((((.(((((((----(.......----)))))))).)))).))).......---.................((((((...........)))))).. ( -23.80)
>DroAna_CAF1 12232 93 - 1
CACAAACGGACGUACGU----ACAUCGGG----CUGGUGAGGCUGUAUGUAU-UGUAAGUGUAUUAAAUAGCCGAUCGGCAACAGACAAACUCGGUUGCUUA
....(((.((.((.((.----....)).(----(((((..((((((..((((-.......))))...)))))).)))))).........)))).)))..... ( -21.00)
>consensus
CACAAACAGGCGUACAU____ACAUCGCA____UAUGUACGACUGUAUGUAAAUACA___AUAUUAAAUCGCCGAUCAGCAACAGACAAACUUGGUUGCUUA
.(((.((((.(((((((.................))))))).)))).)))...........................((((((.((.....)).)))))).. (-18.35 = -18.16 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:33 2006