Locus 6930

Sequence ID 3R_DroMel_CAF1
Location 18,279,076 – 18,279,167
Length 91
Max. P 0.973826
window11242

overview

Window 2

Location 18,279,076 – 18,279,167
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 86.08
Mean single sequence MFE -31.20
Consensus MFE -23.35
Energy contribution -26.85
Covariance contribution 3.50
Combinations/Pair 1.00
Mean z-score -2.76
Structure conservation index 0.75
SVM decision value 1.72
SVM RNA-class probability 0.973826
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18279076 91 - 27905053
GCUACUUCAAAUCGGGAGUGGGAAUUGCCAGGUGGCCAGGUGGUUAGGGGACUACAUGGCAACGGGGAUUUGGAAGGGAAGUGGCUUGGAC
((((((((...((((.(((....))).))..((.((((.((((((....)))))).)))).)).........))...))))))))...... ( -31.60)
>DroSec_CAF1 4643 91 - 1
GCUACUUCAAAUCGGGAGUGGGAAUUGCCAGGUGGCCAGGUGGUUAGGGGACUACGGGGCCACGGGGAUUUUGAAGAGAAGUGGCUUGGAC
((((((((....(....)(.((((((.((..((((((..((((((....))))))..)))))))).)))))).)...))))))))...... ( -37.00)
>DroSim_CAF1 5393 91 - 1
GCUACUUCAAAUCGGGAGUGGGAAUUGCCAGGUGGCCAGGUGGUUAGGGGACUACGGGGCCACGGGGACUUUGAAGGGAAGUGGCUUGGAC
((((((((...((((.(((....))).))..((((((..((((((....))))))..))))))(....)...))...))))))))...... ( -38.00)
>DroYak_CAF1 4701 75 - 1
GCUACUUCAAAUCGGGAGUGGGAAUUGCCAGGUGGCCAGGUGACUAGG----------------GGGAUGUGGAAGGGAAGAGGCUUGGAC
.(((((((......)))))))......((((((..(((.((..(....----------------)..)).)))..........)))))).. ( -18.20)
>consensus
GCUACUUCAAAUCGGGAGUGGGAAUUGCCAGGUGGCCAGGUGGUUAGGGGACUACGGGGCCACGGGGAUUUGGAAGGGAAGUGGCUUGGAC
((((((((...((((.(((....))).))..((((((..((((((....))))))..)))))).........))...))))))))...... (-23.35 = -26.85 +   3.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:30 2006