| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,272,716 – 18,272,824 |
| Length | 108 |
| Max. P | 0.614917 |
| Location | 18,272,716 – 18,272,824 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.75 |
| Mean single sequence MFE | -42.48 |
| Consensus MFE | -30.23 |
| Energy contribution | -32.82 |
| Covariance contribution | 2.59 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.614917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18272716 108 - 27905053 CGCCGGCUCCAGCCAAACAACGCUCCACUCUGCCAGAAUUCCCGAUUUCUGGAUCGGUGACUAGCAC---GGCUCCUGCAGGAUCUGGAUAUGGAUCUGGAGGAGCCACCA ....(((....))).......(((.((((...((((((........))))))...))))...)))..---(((((((.(((.((((......))))))).))))))).... ( -43.30) >DroSec_CAF1 868 108 - 1 CGCCGGCUGCGGCCAAACAACGCUCCACUCUGCCGGAAUUCCCGGUUUCUGGAUCGGCGACCAGCAU---GGCUCCUGCAGGAUCUGGAUAUGGAUCUGGUGGAGCCACUA (((((((....))).......(.((((....(((((.....)))))...)))).))))).......(---((((((.((.((((((......)))))).)))))))))... ( -46.50) >DroSim_CAF1 869 108 - 1 CGCCGGCUGCGGCCAAACAACGCUCCACUCUGCCGGAAUUCCCGGUUUCUGGAUCGGUGACCAGCAU---GGCUCCUGCAGGAUCUGGAUAUGGAUCUGGUGGAGCCACCA (((((((....))).......(.((((....(((((.....)))))...)))).))))).......(---((((((.((.((((((......)))))).)))))))))... ( -44.60) >DroEre_CAF1 6732 108 - 1 CGCCGGCUCCGGCUAAACAGCGCUCCACUCUGCCAGAAUUCCCAGUCUCUGGAUCGGUGACCACCAC---GGCUCCUGUAGGAUCUGGAUAUGGAUCUGGAGGAGCCACCA .((((....))))............((((...(((((..........)))))...))))........---(((((((.(((.((((......))))))).))))))).... ( -39.60) >DroYak_CAF1 888 108 - 1 CGCCGGCUCCGGCUAAACAGCGCUCCACUCUGCCGGAAUUCCCGGUCGCUGGAUCGGUGACCACCAC---GGCUCCUGCAGGAUCUGGAUAUGGCUCUGGAGGAGCCACCA ((((((.((((((....(((.(.....).)))((((.....))))..))))))))))))........---(((((((.(((..((.......))..))).))))))).... ( -47.90) >DroPer_CAF1 6037 96 - 1 CCCCGGCUCCGGGAAAACAGCGUUCCACUCUGCCGGAGUUCCCUGU------------GCCCACCACAUCGGCCCCAGUAGGA---GGAGGAGGACCCAGUGGAGCUACGA .((((....))))........((((((((.....((.(((((((((------------(.....))).....((((....)).---))))).))))))))))))))..... ( -33.00) >consensus CGCCGGCUCCGGCCAAACAACGCUCCACUCUGCCGGAAUUCCCGGUUUCUGGAUCGGUGACCACCAC___GGCUCCUGCAGGAUCUGGAUAUGGAUCUGGAGGAGCCACCA .((((....))))....((.((.((((....(((((.....)))))...)))).)).))...........(((((((.(.((((((......))))))).))))))).... (-30.23 = -32.82 + 2.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:29 2006