Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,271,084 – 18,271,204 |
Length | 120 |
Max. P | 0.922010 |
Location | 18,271,084 – 18,271,204 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -33.75 |
Consensus MFE | -29.98 |
Energy contribution | -30.60 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.06 |
Mean z-score | -2.12 |
Structure conservation index | 0.89 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.922010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18271084 120 + 27905053 AUCACCUUGAGUCCCAUGGGUCCCUCCCAAUCGUAGAGGCGACGCAGAUUUUUGCAGCACUCUAAAUCGAAAACCAGAACCUUUUUGGUCUUCUGUAUUUCGGGGUUCUCCAGCACAUAU .....((.(((.(((.((((.....))))....(((((((...((((....)))).)).)))))...(((((..(((((((.....)))..))))..))))))))..))).))....... ( -35.20) >DroSec_CAF1 27303 120 + 1 AUCACCUUGAGUCCCAUGGGUCCCUCCCAAUCGUAGAGGCGACGCAUAUUUUUGCAGCACUCUAAAUCGAAAACCAGAACCUUCUUGGUCUUCUGUAUUUCGGGGUUCUCCAGCACAUAU .....((.(((.(((.((((.....))))....(((((((...(((......))).)).)))))...(((((..(((((((.....)))..))))..))))))))..))).))....... ( -35.60) >DroSim_CAF1 28290 120 + 1 AUCACCUUGAGUCCCAUGGGUCCCUCCCAAUCGUAGAGGCGACGCAGAUUUUUGCAGCACUCUAAAUCGAAAACCAGAACCUUCUUGGUCUUCUGUAUUUCGGGGUUCUCCAGCACAUAU .....((.(((.(((.((((.....))))....(((((((...((((....)))).)).)))))...(((((..(((((((.....)))..))))..))))))))..))).))....... ( -35.20) >DroYak_CAF1 27803 120 + 1 AGCGCUUCGAGUCCCAUGGGUCCCUUCCAAUCGUAGAGGCAACGCAGACUUUUACAGCACUCUAAAUCAAAAACCAGAACCUUCUUGGUCUUCUGUAUGUCGGGGUUCUCAAGCACAUAU .(.((((.((..(((.((.((..((((........))))..)).))(((...(((((............((.((((((....)).)))).))))))).))))))..))..)))).).... ( -29.00) >consensus AUCACCUUGAGUCCCAUGGGUCCCUCCCAAUCGUAGAGGCGACGCAGAUUUUUGCAGCACUCUAAAUCGAAAACCAGAACCUUCUUGGUCUUCUGUAUUUCGGGGUUCUCCAGCACAUAU .....((.(((.(((.((((.....))))....(((((((...((((....)))).)).)))))...(((((..(((((((.....)))..))))..))))))))..))).))....... (-29.98 = -30.60 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:28 2006