Locus 6926

Sequence ID 3R_DroMel_CAF1
Location 18,269,708 – 18,269,828
Length 120
Max. P 0.914287
window11235

overview

Window 5

Location 18,269,708 – 18,269,828
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -32.46
Consensus MFE -29.83
Energy contribution -30.39
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -2.14
Structure conservation index 0.92
SVM decision value 1.09
SVM RNA-class probability 0.914287
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18269708 120 + 27905053
CCACAUAUUCGUCGUAUGGUUCCUCCAAUUCUACACCCUUUAGCAACAGCGGCAUCAUCUUGCUAAGGGUAAGAGUUUCCACAUAAGCUUGCACUGUUUGACCUUGCUCAAUUUGAGCAA
..........((((.(((((..............((((((..((....))((((......))))))))))..((((((......))))))..))))).))))..(((((.....))))). ( -27.80)
>DroSec_CAF1 25927 120 + 1
CCACAUAUUCGUCGUAUGGUUCCUCCAAUUCUACACCCUUCAGCAACAGCGGCAUCAUCUUGCUAAGGGUGAGAGUUUCCACAUAAGCCUGCACGGUUUGACCUUGCUCAAUUUGAGCAA
...((...((((.(((.((((.....((((((.(((((((..((....))((((......)))))))))))))))))........)))))))))))..))....(((((.....))))). ( -35.12)
>DroSim_CAF1 26914 120 + 1
CCACAUAUUCGUCGUAUGGUUCCUCCAAUUCUACACCCUUCAGCAACAGCGGCAUCAUCUUGCUAAGGGUGAGAGUUUCCACAUAAGCCUGCACGGUUUGACCUUGCUCAAUUUGAGCAA
...((...((((.(((.((((.....((((((.(((((((..((....))((((......)))))))))))))))))........)))))))))))..))....(((((.....))))). ( -35.12)
>DroYak_CAF1 26427 120 + 1
CCACAUAUUCGUCGUAAGGUUCCUCCAAUUCUACACCCUUUAGCAACAGGGGCAUCAUCUUGCUAAGGGUGAGAGUUUCCACAUAAGCCUGCACCGUUUGACCCUGCUCGAUUUGAGCAA
.....((..((..(((.((((.....((((((.(((((((.(((((...(.....)...))))))))))))))))))........)))))))..))..))....(((((.....))))). ( -31.82)
>consensus
CCACAUAUUCGUCGUAUGGUUCCUCCAAUUCUACACCCUUCAGCAACAGCGGCAUCAUCUUGCUAAGGGUGAGAGUUUCCACAUAAGCCUGCACGGUUUGACCUUGCUCAAUUUGAGCAA
...((...((((.(((.((((.....((((((.(((((((.(((((.............))))))))))))))))))........)))))))))))..))....(((((.....))))). (-29.83 = -30.39 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:23 2006