Locus 6925

Sequence ID 3R_DroMel_CAF1
Location 18,269,061 – 18,269,169
Length 108
Max. P 0.956132
window11234

overview

Window 4

Location 18,269,061 – 18,269,169
Length 108
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 93.06
Mean single sequence MFE -34.75
Consensus MFE -31.01
Energy contribution -30.82
Covariance contribution -0.19
Combinations/Pair 1.18
Mean z-score -2.17
Structure conservation index 0.89
SVM decision value 1.46
SVM RNA-class probability 0.956132
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18269061 108 - 27905053
CUGUGGCAAUUGCACCCCACUGAAUUGCUUAGUGAGACGAGCGAAUCUCGCUUGAACUAUGUUAUCUUCCUCAGGAGAUUAAUGGAGCAUUGCCGCAGCUUGCCUCGA
((((((((((.((....((((((.....))))))...((((((.....))))))..((((...((((((....))))))..)))).)))))))))))).......... ( -39.30)
>DroSec_CAF1 25280 108 - 1
CUGUGGCAAUUGCACCCAACUGAAUUGCUUAGUGAGACGAGCGAAUCUCGCUUAAACUAUGUUAUCUUCCUCAGGAGAUUGGUGGAGCAUUGCCGCAGCUUGCCUCGA
((((((((((.((.((..((..(.((.((.((..(((.(((((.....))))).(((...))).)))..)).)).)).)..)))).)))))))))))).......... ( -33.90)
>DroSim_CAF1 26267 108 - 1
CUGUGGCAAUUGCACCCAACUGAAUUGCUCAGCGAGACGAGCGAAUCUCGCUUAAACUAUGUUAUCUUCCUUAGGAGAUUGGUGGAGCAUUGCCGCAGCUUGCCUCGA
((((((((((.((.((..((..(.......(((((((........)))))))............(((((....))))))..)))).)))))))))))).......... ( -34.60)
>DroYak_CAF1 25774 108 - 1
UUGUGGCAAUUGCACCCCACUGAAUUGCUUAGUGAAACAAGCGAAUCUCGCUUAAACUAUGUAAUCUUCCUUAGAAGAUUGAUGGAACAUUGCCGUAGCUUGCCUCGA
(((.(((((((((....((((((.....))))))....(((((.....)))))...((((.((((((((....)))))))))))).........)))).))))).))) ( -31.20)
>consensus
CUGUGGCAAUUGCACCCAACUGAAUUGCUUAGUGAGACGAGCGAAUCUCGCUUAAACUAUGUUAUCUUCCUCAGGAGAUUGAUGGAGCAUUGCCGCAGCUUGCCUCGA
((((((((((.((....((((((.....))))))....(((((.....)))))...((((...((((((....))))))..)))).)))))))))))).......... (-31.01 = -30.82 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:22 2006