Locus 6924

Sequence ID 3R_DroMel_CAF1
Location 18,268,501 – 18,268,621
Length 120
Max. P 0.540961
window11233

overview

Window 3

Location 18,268,501 – 18,268,621
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -40.88
Consensus MFE -37.81
Energy contribution -38.00
Covariance contribution 0.19
Combinations/Pair 1.08
Mean z-score -1.46
Structure conservation index 0.93
SVM decision value 0.01
SVM RNA-class probability 0.540961
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18268501 120 + 27905053
UCCUUUUGCUCCAAAUUGCUUGGCAGUAACUCUGCGAAUGUUUCAGCUAAUCGGGGCUGGCGCUCGAGCAGCAAGCAGGCCAAACGAAUGGCGGAUUUGCUGAGUUUUCGAGAGGAUGUA
(((((((((((......(((((((((.....))))....((.((((((......)))))).)).)))))(((((((..((((......)))).).))))))))))....))))))).... ( -41.20)
>DroSec_CAF1 24720 120 + 1
UCCUUCUGCUCCAAAUUGCUUGGUAGUAACUCUGCGAAUUUCUCAGCUAAUCGGGGCUGGCGCUCGAGCAGCAAGCAGGCCAAACGAAUGGCGGAUUUGCUGAGUUUUCGAGAGGAUGUA
......((((((((.....)))).)))).((((.((((...((((((.((((...(((.((((....)).)).)))..((((......)))).)))).))))))..))))))))...... ( -42.40)
>DroSim_CAF1 25707 120 + 1
UCCUUCUGCUCCAAAUUGCUUGGUAGUAACUCUGCGAAUUUCUCAGCUAAUCGGGGCUGUCGCUCGAGCAGCAAGCAGGCCAAACGAAUGGCGGAUUUGCUGAGUUUUCGAGAGGAUGUA
......((((((((.....)))).)))).((((.((((...((((((.((((...((((((....)).))))......((((......)))).)))).))))))..))))))))...... ( -41.30)
>DroYak_CAF1 25214 120 + 1
UCCUUCUGCUCCAAAUUGCUUGGUAGUAACUCUGUAAAUUUCUCAGCUAAUCGGGUCUGGCGCUCGAGCAGCAGGCAGGCCAAACGGAUGGCGGAUUUGCUGAGUUUUCGAGAGGAUGUA
((((..((((((((.....)))).)))).(((.(.(((...((((((.((((.((((((.((((.....))).).))))))...((.....)))))).)))))).))))))))))).... ( -38.60)
>consensus
UCCUUCUGCUCCAAAUUGCUUGGUAGUAACUCUGCGAAUUUCUCAGCUAAUCGGGGCUGGCGCUCGAGCAGCAAGCAGGCCAAACGAAUGGCGGAUUUGCUGAGUUUUCGAGAGGAUGUA
......((((((((.....)))).)))).((((.((((...((((((.((((...(((.((((....)).)).)))..((((......)))).)))).))))))..))))))))...... (-37.81 = -38.00 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:21 2006