Locus 6923

Sequence ID 3R_DroMel_CAF1
Location 18,267,782 – 18,267,902
Length 120
Max. P 0.637891
window11232

overview

Window 2

Location 18,267,782 – 18,267,902
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.89
Mean single sequence MFE -30.92
Consensus MFE -25.84
Energy contribution -26.52
Covariance contribution 0.69
Combinations/Pair 1.07
Mean z-score -1.70
Structure conservation index 0.84
SVM decision value 0.22
SVM RNA-class probability 0.637891
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18267782 120 + 27905053
CUAAGAGAUGGUCAAAACAGCAGGAGUGCGUGCAAAUCAUUUCGUAUAGAAGUGUUGGUGUUGCAUCCUCCUCCUGCUGUGCAUCCUCCUUAUAUUCAUCAUACAUUCCAUCACACAGGA
.((((.((.((.....((((((((((.(.((((((..((((((.....))))))......)))))).)..))))))))))....))))))))..............(((........))) ( -37.20)
>DroSec_CAF1 24000 120 + 1
CUAACAGAUGGUCAAAACAGCAAGAGUGCGUGCAAAUCAUUUCGGAUAGAAGUGUUGGUGUUGCAUCCUCCUCCUGCUGAGCAUCCUCCUUAUAAUCAUCAUAUAUUCCAUCACACAGGA
......(((((......(((((.(((.(.((((((..((((((.....))))))......)))))).)..))).)))))...........((((.......))))..)))))........ ( -27.90)
>DroSim_CAF1 24988 120 + 1
CUAAGAGAUGGUCAAAACAGCAAGAGUGCGUGCAAAUCAUUUCGUAUAGAAGUGUUGGUGUUGCAUCCUCCUCCUGCUGUGCAUCCUCCUUAUAAUCAUCAAAUAUUCCAUCACACAGGA
.((((.((.((.....((((((.(((.(.((((((..((((((.....))))))......)))))).)..))).))))))....))))))))..............(((........))) ( -30.70)
>DroYak_CAF1 24495 120 + 1
CCAAAAGAUGGUCAAAACAGCAAGAGUGCGUGCAGAUCAUUUCAUAUAGAAGUGUUGGUGUGGCAUCCUCCUCCUGCUGCACAUCCUCCUUAUAAUCAUCGUACAUUCCAUCACACAGGA
......(((((........(((....)))((((.(((((((((.....))))))...(((..(((.........)))..)))...............)))))))...)))))........ ( -27.90)
>consensus
CUAAGAGAUGGUCAAAACAGCAAGAGUGCGUGCAAAUCAUUUCGUAUAGAAGUGUUGGUGUUGCAUCCUCCUCCUGCUGUGCAUCCUCCUUAUAAUCAUCAUACAUUCCAUCACACAGGA
....(((..((.....((((((.(((.(.((((((..((((((.....))))))......)))))).)..))).))))))....))..)))...............(((........))) (-25.84 = -26.52 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:20 2006