Locus 6922

Sequence ID 3R_DroMel_CAF1
Location 18,267,116 – 18,267,236
Length 120
Max. P 0.939131
window11231

overview

Window 1

Location 18,267,116 – 18,267,236
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.22
Mean single sequence MFE -42.18
Consensus MFE -39.41
Energy contribution -39.35
Covariance contribution -0.06
Combinations/Pair 1.08
Mean z-score -1.86
Structure conservation index 0.93
SVM decision value 1.28
SVM RNA-class probability 0.939131
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18267116 120 - 27905053
UCCUGUUACCCCUGAUGAUGCACUGCUUUGCACCCGAGUCCGUAGUGUGGGCCCGUUGGCCUGUCCAGAAUGGAUUACUGGCGAUCACCUUCUGCGGUCUAUCAUCUCUGGACAAGGACA
((((....((...(((((((((......))).....((.((((((.((((...(((..(...((((.....))))..)..))).))))...)))))).))))))))...))...)))).. ( -40.00)
>DroSec_CAF1 23334 120 - 1
UCCUCUUACCCAUGAUGAUGCACUGCUUCGCACCCGAGUCCGUAGUCUGGGCCCGUUGGCCUGUCCAGAAUGGAUUACUGGCGAUCACCUUCUGCGGUCUGUCAUCUCUGGACAAGGACA
((((.....(((.(((((((.(((((.((((.....(((((((..(((((((..(....)..))))))))))))))....)))).........))))).)))))))..)))...)))).. ( -40.90)
>DroSim_CAF1 24108 120 - 1
UCCUCUUACCCAUGAUGAUGCACUGCUUCGCACCCGAGUCCGUUGUCUGGGCCCGUUGUCCUGUCCAGAAUGGAUUAUUGGCGAUCACUUUCUGCGGUCUAUCAUCUCUGGACAAGGACA
((((.....(((.(((((((.(((((.((((.....(((((((..(((((((..(....)..))))))))))))))....)))).........))))).)))))))..)))...)))).. ( -41.20)
>DroYak_CAF1 23829 120 - 1
UCCUGUUGCCGCUGAUGAUGCACUGCUUCGCACCGGAGUCUGUAGUCUGGGCUCGCUGGCCUGUCCAGAAUGGAUUACUGGCGAUUACCUUCUGCGGACUAUCAUCUCUGGAUAAGGACA
((((....(((..((((((((........)).....(((((((((...((..((((..(...((((.....))))..)..))))...))..)))))))))))))))..)))...)))).. ( -46.60)
>consensus
UCCUCUUACCCAUGAUGAUGCACUGCUUCGCACCCGAGUCCGUAGUCUGGGCCCGUUGGCCUGUCCAGAAUGGAUUACUGGCGAUCACCUUCUGCGGUCUAUCAUCUCUGGACAAGGACA
((((....((...(((((((.(((((.((((.....(((((((..(((((((..(....)..))))))))))))))....)))).........))))).)))))))...))...)))).. (-39.41 = -39.35 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:19 2006