| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,264,500 – 18,264,610 |
| Length | 110 |
| Max. P | 0.953325 |
| Location | 18,264,500 – 18,264,610 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.46 |
| Mean single sequence MFE | -32.00 |
| Consensus MFE | -20.51 |
| Energy contribution | -21.51 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.953325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18264500 110 - 27905053 CCAUGAAAAGUAACCAAAGGAAAACUGGCUGCCAUGGCAUUGAACCAUCACCAUCCCCACAAUGGGCCAAAAUGAGAAAUGUGGGGGUCAGGAGUUCAGCCGGUAGCCGG- ........................(((((((((..(((..(((((..((...(((((((((.....(......).....)))))))))...)))))))))))))))))))- ( -37.80) >DroSec_CAF1 20705 110 - 1 CUGUGAAAAGUAGCCAAAUGAAAACUGGCUGCCAUGGCAUUGAACCAUCACCAUCCCCACAAUGGGCCAAAAUGAAAAAUGUGGGGGUCAGGAGUUCAGCCGGUAGCCGG- ........................(((((((((..(((..(((((..((...(((((((((.....(......).....)))))))))...)))))))))))))))))))- ( -37.80) >DroSim_CAF1 21488 110 - 1 CUGUGAAAAGUAGCCAAAGGAAAACUGGCUGCCAUGGCAUUGAACCAUCAGCAUCCCCACAAUGGGCCAAAAUGAAAAAUGCGGGGGUCAGGAGUUCAGCCGGUAGCCGG- ........................(((((((((..(((..(((((..((...((((((.((.....(......).....)).))))))...)))))))))))))))))))- ( -33.90) >DroEre_CAF1 21353 100 - 1 UGGUGAAAAUUAGGCAAAGGAAAACUGGCUGCCAUGGCAUUGAACUAU--------CCACAAUGGGCCAAAAUAAAAA--GUGGGGGUCAGGAGUUCAGCCGGUAGCCGG- ((((....))))............(((((((((..(((..(((((..(--------((......((((...((.....--))...)))).))))))))))))))))))))- ( -30.20) >DroYak_CAF1 21206 100 - 1 UGGUGAAAAUUAGUCAAAGGAAAACUGGCUGCCAUGGCAUUGAACUAU--------UCACAAUGGGCCACAAUACAAA--GUGGGGGUCAGGAGUUCAGCCGGUAGCCGG- ((((....))))............(((((((((..(((..((((((..--------..((......((((........--))))..))....))))))))))))))))))- ( -30.30) >DroAna_CAF1 21975 85 - 1 ---------------AAAAGAAAAUGGACUGCCAUGGCAUUGAACUAC--------GCACAAUGGGUCACC-CGAAAA--AUAGAGUUCAAAAGGUCAGCCAGUAGCCGUC ---------------........((((.((((..((((.(((((((..--------......((((...))-))....--....)))))))...))))....)))))))). ( -21.99) >consensus CGGUGAAAAGUAGCCAAAGGAAAACUGGCUGCCAUGGCAUUGAACCAU________CCACAAUGGGCCAAAAUGAAAA__GUGGGGGUCAGGAGUUCAGCCGGUAGCCGG_ ........................(((((((((..(((..(((((............(.....)((((.................))))....))))))))))))))))). (-20.51 = -21.51 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:16 2006