| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,264,212 – 18,264,311 |
| Length | 99 |
| Max. P | 0.738706 |
| Location | 18,264,212 – 18,264,311 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 88.61 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -26.80 |
| Energy contribution | -26.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738706 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18264212 99 - 27905053 UA-----UAAAUACAUAUAUGGGGGGAUACCCCGACCCCUCGCAGCUAAAACACAUUUGGAUGCAUAUGAUUAUCCGGAGUGCGUUGGCAAAUCUUUUCUCGGG ..-----.............((((((.........))))))...(((((..(((.((((((((........)))))))))))..)))))............... ( -26.80) >DroSec_CAF1 20414 91 - 1 UA-------------UAUAUGGGGGGAUACCCCGACCCCUCGCAGCUAAAACACAUUUGGAUGCAUAUGAUUAUCCGGAGUGCGUUGGCAAAUCUCUUCUCUAG ..-------------.....((((((.........))))))...(((((..(((.((((((((........)))))))))))..)))))............... ( -26.80) >DroSim_CAF1 21199 91 - 1 UA-------------UGUAUGGGGGGAUACCCCGACCCCUCGCAGCUAAAACACAUUUGGAUGCAUAUGAUUAUCCGGAGUGCGUUGGCAAAUCUCUUCUCUGG ..-------------(((..((((((.....))..))))..)))(((((..(((.((((((((........)))))))))))..)))))............... ( -27.20) >DroEre_CAF1 21062 102 - 1 GAGUGGAUGGAU--GUAUAUGGGGGGAUACCCCGACCCCUCGCAGCUAAAACACAUUUGGAUGCAUAUGAUUAUCCGGAGUGCGUUGGCAAAUCUUUACUCGGG ((((((..((((--......((((((.........))))))...(((((..(((.((((((((........)))))))))))..)))))..))))))))))... ( -34.40) >consensus UA_____________UAUAUGGGGGGAUACCCCGACCCCUCGCAGCUAAAACACAUUUGGAUGCAUAUGAUUAUCCGGAGUGCGUUGGCAAAUCUCUUCUCGGG ....................((((((.........))))))...(((((..(((.((((((((........)))))))))))..)))))............... (-26.80 = -26.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:15 2006