| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,263,360 – 18,263,466 |
| Length | 106 |
| Max. P | 0.629438 |
| Location | 18,263,360 – 18,263,466 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 69.05 |
| Mean single sequence MFE | -22.88 |
| Consensus MFE | -3.94 |
| Energy contribution | -4.94 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.17 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629438 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18263360 106 - 27905053 UAACAUUGUACACCGCAUAUACUCUUCAGAUAGAAAGUGGAAUAUUUCUU----------GCUGAUAACUUUGCAUCCCAAUAUAGAACUAGAUGUUCUGAGUGUAUAAUGGUGAU ...((((((((((.(((........((((..(((((........))))).----------.))))......))).........((((((.....)))))).))))))))))..... ( -28.44) >DroSec_CAF1 19590 95 - 1 UAACAUAUAU--CAGCAUAUACUCUACAGAUAGAAAGUGGAAUAUAUCUU----------UCUGAUAAUUUUUCAUUCCAACAUAG---------CUCUGAGUGUAUAAUGGUGAU ........((--((.(((((((.((.((((.......((((((.((((..----------...)))).......))))))......---------.)))))).)))).))).)))) ( -20.34) >DroSim_CAF1 20367 104 - 1 UAACAUAUAU--CAGCAUAUACUCUUCAGAUAGAAAGUGGAAUAUAUUUU----------UGUGAUAAUUUUUCAUUCCAAUAUAGAAUUAGAUGAUUUGAGUGUAUAAUGGUGAU .......(((--((..((((((((.(((..(((....(((((((((....----------)))((.......))))))))........)))..)))...))))))))..))))).. ( -19.00) >DroEre_CAF1 20222 114 - 1 AAUAAUAUAU--AAGCAUAUAUGCUUCAUGUUGAAAGUGUGAGAUUUCUUGAAUAUAAUUAAAAGUCAUUUUGCAUCCCAAUAUAGAAUUGGAUGUUCUGAGUGUAUAGUGGGGAU ..((((((..--(((((....))))).))))))...(((..((((..(((............)))..))))..)))((((.((((.(.(..(.....)..).).)))).))))... ( -23.20) >DroYak_CAF1 20057 108 - 1 UACAAUAUAC--AAGCAAAUAUGCUAUAUGAAGCCA-UCUGAUA----UUCAAGAUAUUUGCUGGUAAAUUU-CAUCCCAAUACAGAAUUAGAUGCUCUGAGUGUAUGAUGGUGAU .......(((--.((((((((.(((......)))..-(((....----....))))))))))).)))....(-((((...(((((...((((.....)))).)))))...))))). ( -23.40) >consensus UAACAUAUAU__CAGCAUAUACUCUUCAGAUAGAAAGUGGAAUAUAUCUU__________GCUGAUAAUUUUGCAUCCCAAUAUAGAAUUAGAUGCUCUGAGUGUAUAAUGGUGAU ..........................................................................((((((.((((.(.((((.....)))).).)))).))).))) ( -3.94 = -4.94 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:12 2006