Locus 6914

Sequence ID 3R_DroMel_CAF1
Location 18,255,626 – 18,255,721
Length 95
Max. P 0.536103
window11220

overview

Window 0

Location 18,255,626 – 18,255,721
Length 95
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 82.87
Mean single sequence MFE -22.95
Consensus MFE -16.88
Energy contribution -17.00
Covariance contribution 0.12
Combinations/Pair 1.38
Mean z-score -1.46
Structure conservation index 0.74
SVM decision value 0.01
SVM RNA-class probability 0.536103
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18255626 95 - 27905053
ACGAUGAUUUCCAUAGUGAAAUUGACGCAAAUGAGCAGCCAAGCAGGCAUGGCCAUCGAUU--UUGUUGGCCAAAA---AGCGAAAAGGCCCCAACGAAA
.(((((....((((............((......)).(((.....))))))).))))).((--(((((((((....---........))))..))))))) ( -23.60)
>DroSec_CAF1 11694 84 - 1
--------UUCCAUA--GAAAUUGACGCAAAUGAGCAGCCAAGCAGGCAUGGCCAUCGAUU--UUGUUGGCCAAAA---AGCGAAAA-GCCCAAACGGAA
--------.(((...--....((..(((.........(((.....))).((((((.((...--.)).))))))...---.)))..))-........))). ( -20.46)
>DroSim_CAF1 12281 94 - 1
ACGAUGAUUUCCAUAGUGAAAUUGACGCAAAUGAGCAGCCAAGCAGGCAUGGCCAUCGAUU--UUGUUGGCCAAAA---AGCGAAAA-GCCCAAACGGAA
.((..((((((......))))))..(((.........(((.....))).((((((.((...--.)).))))))...---.)))....-.......))... ( -22.70)
>DroEre_CAF1 12204 94 - 1
ACGAUGAUUUCCAUAGUGAAAUUGACGCAAAUGAGCAGCCAAGCAGGCAUGGCCAUCGAUU--UUGUUGGCCAAAA---AGCGAAAA-GCACAAACGGAA
........((((...(((...((..(((.........(((.....))).((((((.((...--.)).))))))...---.)))..))-.)))....)))) ( -24.00)
>DroYak_CAF1 11837 94 - 1
ACGAUGAUUUCCAUAGUGAAAUUGACGCAAAUGAGCGGCCAAGCAGACAUGGCCAUCGAUU--UUGUUGGCCAAAA---AGCGAAAU-GCUCAAACGGAA
........((((...(((.......)))...((((((((((........)))))....(((--(((((........---))))))))-)))))...)))) ( -26.30)
>DroAna_CAF1 12703 91 - 1
----UGGCUUCCAUACCGAGAUUGAUGCAAAUGAUCAGCAAAGCAGACAGGGCUAUUGGUUUUUUGUGGGCUUUAGCUCCGCGAAAA-AUACAAAC----
----((((((...........(((((.......)))))...........))))))((((((((((((((((....)).)))))))))-)).)))..---- ( -20.65)
>consensus
ACGAUGAUUUCCAUAGUGAAAUUGACGCAAAUGAGCAGCCAAGCAGGCAUGGCCAUCGAUU__UUGUUGGCCAAAA___AGCGAAAA_GCCCAAACGGAA
.....((((((......))))))..(((.........(((.....))).((((((.(((....))).)))))).......)))................. (-16.88 = -17.00 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:08 2006