Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,253,603 – 18,253,713 |
Length | 110 |
Max. P | 0.846761 |
Location | 18,253,603 – 18,253,713 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 82.92 |
Mean single sequence MFE | -48.05 |
Consensus MFE | -33.17 |
Energy contribution | -34.40 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.18 |
Mean z-score | -2.88 |
Structure conservation index | 0.69 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18253603 110 - 27905053 GCUGGCGGUUCUUCUGCUGGCUGCUCUGAAGUUACAUGUGACCAAUGCGGAAUCCAGUGGCGAUCACAAGGAGGGGGAGG------UGGAGAGCGCCAGCACGGAGAGCAACGAGA .((.(..((((((((((((((.(((((...(((((.((.((((.....))..)))))))))..((((............)------))))))))))))))).)))))))..).)). ( -42.20) >DroPse_CAF1 14046 110 - 1 UCUGGUGCUCCUCUUGCUGGCCGCUCUCACGCUCCAGUUGGCCAGCGCC------GGCGGGGAGCCGGAGCAGGGGGAGGGCGAGAGCGAGAGCGCCAGCACCGAGAGCAACGAGA (((.((((((.((.(((((((.((((((..(((((.((((((....)))------)))((....))))))).........((....)))))))))))))))..)))))).)).))) ( -61.10) >DroSec_CAF1 9788 110 - 1 GCUGGCGGUUCUUCUGCUGGCUGCUCUGAAGCUCCAUGUGACCAAUGCGGAAUCCAGUGGCGAUCACAAGGAGGGGGAGG------UGAAGAGCGCCAGCACGGAGAGCAACGAGA .((.(..((((((((((((((.(((((..(.((((......((.....))..(((.(((.....)))..)))...)))).------)..)))))))))))).)))))))..).)). ( -48.60) >DroSim_CAF1 10220 110 - 1 GCUGGCGGUUCUUCUGCUGGCUGCUCUGAAGCUCCAUGUGACGAAUGCGGAAUCCAGUGGCGAUCACAAGGAGGGGGAGG------UGGAGAGCUCCAACACAGAGAGCAACGAGA ((..((((.....))))..))((((((....((((.(((((((...((........))..)).))))).))))..((((.------(....).)))).......))))))...... ( -40.70) >DroEre_CAF1 10109 110 - 1 GCUGGCGGUUCUUCUGCUGGCUGCUCUAAAGCUCCAUGUGACCAAUGCGGAAACCAGUGGCAAUCAAAAGGAGGUGGAGG------UGGAGAGUGCCAGCACGGAGAGCAACGAGA .((.(..((((((((((((((.(((((..(.((((((.((.(((.((.(....))).))))).((.....)).)))))).------)..)))))))))))).)))))))..).)). ( -50.60) >DroYak_CAF1 9788 104 - 1 GCUGGCGGUUCUUCUGCUGGCUGCUCUAAAGCUCCAUGUGACCAAUGCGGAAUCCAGUGGCGAUCAAAAGGAGG------------UGGAGAGUGCCAGCACGGAGAGCAACGAGA .((.(..((((((((((((((.(((((..(.((((...((((((.((.(....))).)))...)))...)))).------------)..)))))))))))).)))))))..).)). ( -45.10) >consensus GCUGGCGGUUCUUCUGCUGGCUGCUCUGAAGCUCCAUGUGACCAAUGCGGAAUCCAGUGGCGAUCACAAGGAGGGGGAGG______UGGAGAGCGCCAGCACGGAGAGCAACGAGA .((.(..((((((((((((((.(((((....((((.(((((....(((........)))....))))).))))................)))))))))))).)))))))..).)). (-33.17 = -34.40 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:07 2006