Locus 6912

Sequence ID 3R_DroMel_CAF1
Location 18,252,682 – 18,252,780
Length 98
Max. P 0.657738
window11218

overview

Window 8

Location 18,252,682 – 18,252,780
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 84.67
Mean single sequence MFE -30.68
Consensus MFE -22.93
Energy contribution -22.82
Covariance contribution -0.11
Combinations/Pair 1.12
Mean z-score -2.26
Structure conservation index 0.75
SVM decision value 0.26
SVM RNA-class probability 0.657738
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18252682 98 - 27905053
UGCAGCGCCACAGCAGCAGCAACAGCUGCCCCACAUCGGACCCACCAUCACUAAGCUGAAUGUUUUGGAAACAGAGCCGCCGGCUACUCAGCUGCCCA
.((((((((.((((.(((((....)))))........((.....))........))))...((((((....))))))....)))......)))))... ( -34.40)
>DroPse_CAF1 13122 89 - 1
U---------CCGCAGCAGCAGCAGUAUCCCCACAUUGGACCCACCAUCACCAAGCUGAACGUGCUGGAGACGGAGCCGCCGGCCACCCCGCUGCCCA
.---------..(((((.((.((.(..(((.......)))..).((.((.(((.((.......))))).)).)).)).)).((.....)))))))... ( -25.50)
>DroSec_CAF1 8864 98 - 1
UGCAGCGCCACAGCAGCAGCAACAGCUGCCCCACAUCGGACCCACCAUCACUAAGCUGAAUGUUUUGGAAACAGAGCCGCCGGCUACUCCGCUGCCCA
.((((((((.((((.(((((....)))))........((.....))........))))...((((((....))))))....)))......)))))... ( -34.40)
>DroEre_CAF1 9185 98 - 1
CGCAGCACCACAGCAGCAGCAACAGUUGUCCCACAUCGGACCAACCAUCACUAAGCUGAAUGUUUUGGAAACAGAGCCACCGGCUACUCCGCUGCCCA
....((......)).(((((....(((((((......))).))))........(((((...((((((....))))))...))))).....)))))... ( -31.00)
>DroYak_CAF1 8867 98 - 1
UGCAGCACCUCAGCAGCAGCAGCAGCUGCCCCACAUCGGACCAACCAUCACUAAGCUGAAUGUUUUGGAAACAGAGCCACCGGCUACUCCGCUGCCCA
.(((((...(((((.(((((....)))))........((.....))........)))))..((((((....)))))).............)))))... ( -33.30)
>DroPer_CAF1 13294 89 - 1
U---------CCGCAGCAGCAGCAGUAUCCCCACAUUGGACCCACCAUCACCAAGCUGAACGUGCUGGAGACGGAGCCGCCGGCCACCCCGCUGCCCA
.---------..(((((.((.((.(..(((.......)))..).((.((.(((.((.......))))).)).)).)).)).((.....)))))))... ( -25.50)
>consensus
UGCAGC_CCACAGCAGCAGCAACAGCUGCCCCACAUCGGACCCACCAUCACUAAGCUGAAUGUUUUGGAAACAGAGCCGCCGGCUACUCCGCUGCCCA
............(((((.............((.....))...............((((...((((((....))))))...))))......)))))... (-22.93 = -22.82 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:06 2006