| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,251,090 – 18,251,180 |
| Length | 90 |
| Max. P | 0.686594 |
| Location | 18,251,090 – 18,251,180 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.91 |
| Mean single sequence MFE | -25.00 |
| Consensus MFE | -13.93 |
| Energy contribution | -14.10 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18251090 90 + 27905053 UAUUUACAAAGAUGUUGUACGCAAAACUUAAGUCAAC-----GUGUAGGGCGGUAGAUACUUGUUUCUGGGUAAAAAGGACUCAG---AGGAGCAGGA------------------- (((((((.....((((.(((((...((....))....-----))))).)))))))))))(((((((((((((.......))))))---)..)))))).------------------- ( -23.20) >DroSec_CAF1 7284 90 + 1 UAUUUACAAAGAUGUUGUACGCAAAACUUAAGUCAAC-----GUGUAGGGUUGUAGAUACUUGUUUCUGGGUAAAAAGGACUCAG---AGGAGCAGGA------------------- ((((((((((.((((((.((...........))))))-----)).)....)))))))))(((((((((((((.......))))))---)..)))))).------------------- ( -23.80) >DroSim_CAF1 7829 90 + 1 UAUUUACAAAGAUGUUGUACGCAAAACUUAAGUCAAC-----GUGUAGGGCGGUAGAUACUUGUUUCUGGGUAAAAAGGACUCAG---AGGAGCAGGA------------------- (((((((.....((((.(((((...((....))....-----))))).)))))))))))(((((((((((((.......))))))---)..)))))).------------------- ( -23.20) >DroEre_CAF1 7636 88 + 1 UAUUUACAAAGAUGUUGUACGCAAAACUUAUGUCAAC-----GUGUGGGGCGGUAGUUAUCUAUUUCUGGGUAAAAUGGACUCA-----GGAGCAGGA------------------- ............((((.(((((...((....))....-----))))).)))).......(((.(((((((((.......)))))-----)))).))).------------------- ( -18.30) >DroYak_CAF1 7241 88 + 1 UAUUUACAAAGAUGUUGUACGCAAAACUUAAGUCAAC-----GUGUGGGGCGGUAGAUACUUGUUUCUGGGUAAAAAGGACUCA-----GGAGCAGGA------------------- (((((((.....((((.(((((...((....))....-----))))).)))))))))))(((((((((((((.......)))))-----)))))))).------------------- ( -27.10) >DroPer_CAF1 11654 115 + 1 UAUUUACAAAGAUGUUGUACGUAAAACUUAAUUCAACCGGAUGGGAAGGGCGGUGGACAUCUGGCUCUGUGGG--AAGGAAACAGUACGGGAACGGGGCCGGGACCGGAAACGGAUG .........(((((((...(((....(((.((((....))))...))).)))...)))))))((((((((..(--..(....)..)......))))))))....(((....)))... ( -34.40) >consensus UAUUUACAAAGAUGUUGUACGCAAAACUUAAGUCAAC_____GUGUAGGGCGGUAGAUACUUGUUUCUGGGUAAAAAGGACUCAG___AGGAGCAGGA___________________ (((((((.....((((.(((((....................))))).)))))))))))(((((((((((((.......))))).....)))))))).................... (-13.93 = -14.10 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:05 2006