Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,466,991 – 2,467,109 |
Length | 118 |
Max. P | 0.509281 |
Location | 2,466,991 – 2,467,109 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.41 |
Mean single sequence MFE | -22.57 |
Consensus MFE | -18.88 |
Energy contribution | -18.07 |
Covariance contribution | -0.81 |
Combinations/Pair | 1.25 |
Mean z-score | -1.36 |
Structure conservation index | 0.84 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509281 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2466991 118 - 27905053 AAUCUUGUCAAGUACCUCGCUUAUCGCUACUAAAAACACAAUUACUAGACUCCUUAUUAAAAGCAUAGUU--UUGAAAAGAGGCUCUUCGGGAGUCUCGCUACGAAAAUUUUGGCAUCUA .....(((((((....(((...................(((..((((..((..........))..)))).--)))....(((((((.....)))))))....)))....))))))).... ( -21.90) >DroSec_CAF1 25761 118 - 1 AAUCUUGUCAAGUACCUCGCUUAUUGCUACCAAAAACAUAAUCACUAGAAUCCUUAUUAAACGCAUAGUU--UUGAGAAGAGGCUCUUCGGGAGUCUCACUACGAAAAUUUUGGCAUCUA .....(((((((....(((((((..((((........((((((....))....))))........)))).--.))))..(((((((.....)))))))....)))....))))))).... ( -22.59) >DroSim_CAF1 25255 118 - 1 AAUCUUGUCAAGUACCUCGCUUAUUGCUACCAAAAACACAAUCACUAUAAUCCUUAUUAAACGCAUAGUU--UUGAGAAGAGGCUCUUCGAGAGUCUCACUACGAAAAUUUUGGCAUCUA .....(((((((....(((((((..((((....................................)))).--.))))..(((((((.....)))))))....)))....))))))).... ( -22.12) >DroEre_CAF1 27002 117 - 1 ACUCUUGCCAAUUACCUACCA--AAACUACCAAAAAGACAAGUAUUAAAAUCCUUAUUAAACGCAUGGUUAUUUGUGAAGAGACUCUU-GGGAGUCUCUCUACUAAAAUUUUGGCAUCUA .....((((((..........--(((..((((........((((..........)))).......))))..)))(((.((((((((..-..)))))))).))).......)))))).... ( -23.66) >consensus AAUCUUGUCAAGUACCUCGCUUAUUGCUACCAAAAACACAAUCACUAGAAUCCUUAUUAAACGCAUAGUU__UUGAGAAGAGGCUCUUCGGGAGUCUCACUACGAAAAUUUUGGCAUCUA .....(((((((....(((...................(((..((((..................))))...)))....(((((((.....)))))))....)))....))))))).... (-18.88 = -18.07 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:30 2006