Locus 6909

Sequence ID 3R_DroMel_CAF1
Location 18,245,700 – 18,245,820
Length 120
Max. P 0.511609
window11214

overview

Window 4

Location 18,245,700 – 18,245,820
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.17
Mean single sequence MFE -36.93
Consensus MFE -22.09
Energy contribution -21.68
Covariance contribution -0.41
Combinations/Pair 1.44
Mean z-score -1.57
Structure conservation index 0.60
SVM decision value -0.04
SVM RNA-class probability 0.511609
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18245700 120 - 27905053
UUCGCCAAGGCGGCCAAGUUCAUCAAGGAUCGCAAGAACCUCACGCAAGACCAGCUGGAGGAUCUUGAGAAGAUCGUCAUGGACUCCGCCAAGGCUCAGGCUAUCAUUGAUGCCGCCAAG
...(((..(((((...(((((((..(.((((.(((((.((((..((.......))..)))).)))))....)))).).))))))))))))..)))...(((.(((...))))))...... ( -44.60)
>DroVir_CAF1 1879 120 - 1
UUUGCUAAGGCGGCCAAAUUUAUUAAGGACCGCAAGGAUCUGACCCAAGAUAAGCUUGAGGAGCUCGAGCAGAUUGUCAUGGACUCUGCCAAGGCGCAGGCCAUUAUCGAUGCUGGAAAA
...((...(((((.............(((((....)).)))...(((.((((((((((((...)))))))...))))).)))...)))))..(((....))).........))....... ( -34.80)
>DroGri_CAF1 2301 120 - 1
UUUGCCAAGGCGGCCAAGUUCAUUAAGGACCGCAAGGACCUCACCCAAGAUAAGCUUGAGGGUCUCGAGGAAAUUGUAAUGGACUCUGCCAAGGCGCAGGCGAUCAUCGAUGCCGGUAAA
.(((((..(((((...(((((((((....((....)).((((.((((((.....)))).)).....))))......))))))))))))))..((((....((.....)).))))))))). ( -43.00)
>DroWil_CAF1 2155 120 - 1
UUCGCCAAGGCCGCUAAAUUCAUCAAGGAUCGCAAAAAUCUUACACAAGAUAGUUUGGAUGAACUUGAAAAGAUUGUCAUGGAUUCGGCCAAGGCUCAGGCUAUUAUUGACGCUGGAAAA
...(((..(((((...(((((((((((.(((.((((.(((((....)))))..)))))))...)))))...(.....).)))))))))))..)))((.(((..........))).))... ( -29.60)
>DroMoj_CAF1 1949 120 - 1
UUUGCCAAGGCAGCCAAAUUUAUCAAAGACCGCAAGGAUCUAACUCAGGAUAAGCUUGAAGAUCUGGAGCAGAUUGUCAUGGACUCUGCCAAGGCUCAGGCCAUAAUCGAUGCCGGAAAA
...(((..((((((((..((((((..(((((....)).))).......))))))..(((.((((((...)))))).))))))...)))))..)))((.(((.((.....))))).))... ( -33.50)
>DroAna_CAF1 2854 120 - 1
UUUGCCAAAACCGCCAAGUUCAUUAAGGACCGCAAGAACCUCAGCCAGGAUCAGCUGGAUGAGCUCGAAAAGAUCGUCAUGGAUUCGGCCAAGGCGCAAGCCAUCAUUGAUGCGGCUAAG
...(((......(((.(((((((..(((..(....)..)))((((........))))(((((.((.....)).)))))))))))).)))...(((....)))...........))).... ( -36.10)
>consensus
UUUGCCAAGGCGGCCAAAUUCAUCAAGGACCGCAAGAACCUCACCCAAGAUAAGCUGGAGGAUCUCGAGAAGAUUGUCAUGGACUCUGCCAAGGCGCAGGCCAUCAUCGAUGCCGGAAAA
...(((..(((((...(((((((..(((.((....)).))).......(((((.((.((.....)).))....)))))))))))))))))..)))...(((..........)))...... (-22.09 = -21.68 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:03 2006