Locus 6908

Sequence ID 3R_DroMel_CAF1
Location 18,244,117 – 18,244,207
Length 90
Max. P 0.695176
window11213

overview

Window 3

Location 18,244,117 – 18,244,207
Length 90
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 81.39
Mean single sequence MFE -28.93
Consensus MFE -18.96
Energy contribution -20.93
Covariance contribution 1.97
Combinations/Pair 1.17
Mean z-score -1.81
Structure conservation index 0.66
SVM decision value 0.34
SVM RNA-class probability 0.695176
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18244117 90 + 27905053
---GGUGGCGGAUUCCCUGGACUGUCGCCAAUGACCAGUCCGAACAUUUUUGGGGCUCCGGCACCGCAGCAAAGCAUUCCACAAAACCAAUCA
---((((.((((..(((((((((((((....))).))))))).........)))..)))).))))((......)).................. ( -32.40)
>DroSim_CAF1 283 90 + 1
---GGUGGCGGAUUCCCUGGACUGUCGCCAAUGACCAGUCCGAACAUUUUUGGGGCUCCGGCACCGCAACAAAGCAUUCCACAAAACCAAUCA
---((((.((((..(((((((((((((....))).))))))).........)))..)))).))))((......)).................. ( -32.40)
>DroEre_CAF1 288 90 + 1
---GGUGGCGGAUUCCCCGGACUGUCGCCAAUGACCAGUCCGAAUAUAUUUGGGGCUCCGGCACCACAGCAAAGCAUUCCACAAAACCAAUCA
---((((.((((..(((((((((((((....))).))))))).........)))..)))).))))............................ ( -32.40)
>DroYak_CAF1 280 90 + 1
---GCUGGCGGAUUCCCUGGACUGUCGCCAAUGACCAGUCCGAAUAUAUUUGGGGCUCCGGCACCACAGCAAAGCAUUCCACAAAACCAAUCA
---(((..((((..(((((((((((((....))).))))))).........)))..))))((......))..))).................. ( -25.30)
>DroAna_CAF1 279 81 + 1
---ACUGGUGGAUUCCCGGGACUCUCGCCGAUGACUAGUCCGAAUGUGUUCGGGGCC---------CAGCAGAACAUUCCACAAAACCAGGCA
---.(((.(((..(((((((((..(((..(((.....))))))..)).))))))).)---------)).)))..................... ( -21.40)
>DroPer_CAF1 304 93 + 1
GGGGGCGGCGGUUUUACUGGCCUCUCGCCCCUGACCAGUCCCAAUAUGUUCGGGGCGCAGCAGCCACAGUCAAACAUUCCACAGAACCAAGCA
((((((((.((((.....)))).).)))))))(((..(((((.........)))))((....))....)))...................... ( -29.70)
>consensus
___GGUGGCGGAUUCCCUGGACUGUCGCCAAUGACCAGUCCGAAUAUAUUUGGGGCUCCGGCACCACAGCAAAGCAUUCCACAAAACCAAUCA
...((((.((((.((((.(((((((((....))).))))))(((....))))))).)))).))))............................ (-18.96 = -20.93 +   1.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:02 2006